[[!comment format=mdwn username="gernot" ip="213.168.117.192" subject="comment 2" date="2011-04-03T15:35:52Z" content=""" 'git add .git-annex' didn't do anything. That's when I noticed that this repository is on a case-insensitive HFS+ file system. So, if I get this right it's not a new bug, but similar to this situation: [[git-annex_directory_hashing_problems_on_osx]] Assuming that it was the file system's fault, I went ahead and upgraded yet another clone. That one (on an ext3 file system) had neither staged changes nor left-over untracked files. Everything seems to just have fallen right into place. Is that possible or still weird? """]]