[[!comment format=mdwn
 username="http://joey.kitenet.net/"
 nickname="joey"
 subject="comment 1"
 date="2011-04-03T02:26:20Z"
 content="""
I'm not sure how this happened, as far as I can see, and based on my testing, `git annex upgrade` does stage the location log files. OTOH, I vaguely rememeber needing to stage some of them when I was doing my own upgrades, but that was a while ago, and I don't remember the details.

Your upgrade seems to have gone ok from the file lists you sent, so you can just: `git add .git-annex; git commit`
"""]]