cabal-version: >=1.10
name: find-clumpiness
version: 0.2.3.2
license: GPL-3
license-file: LICENSE
copyright: Copyright 2018 Gregory W. Schwartz
maintainer: gsch@pennmedicine.upenn.edu
author: Gregory W. Schwartz
homepage: http://github.com/GregorySchwartz/find-clumpiness#readme
synopsis: Find the clumpiness of labels in a tree
description:
    Use a clumpiness measure to find the aggregation relationship between labels inside of a tree.
category: Math
build-type: Simple

source-repository head
    type: git
    location: https://github.com/GregorySchwartz/find-clumpiness

library
    exposed-modules:
        Types
        Utility
        NewickConvert
        RJSONConvert
        LineageConvert
        TreeTransform
        Clumpiness
        Print
    hs-source-dirs: src
    default-language: Haskell2010
    build-depends:
        base >=4.7 && <5,
        BiobaseNewick >=0.0.0.2,
        aeson >=1.2.2.0,
        bytestring >=0.10.8.2,
        clumpiness >=0.17.0.0,
        containers >=0.5.10.2,
        hierarchical-clustering >=0.4.6,
        listsafe >=0.1.0.1,
        mtl >=2.2.1,
        text >=1.2.2.2,
        text-show >=3.6.2,
        tree-fun >=0.8.1.0,
        unordered-containers >=0.2.8.0,
        vector >=0.12.0.1

executable find-clumpiness
    main-is: Main.hs
    hs-source-dirs: app
    default-language: Haskell2010
    ghc-options: -threaded -rtsopts -O2
    build-depends:
        base >=4.10.0.0,
        find-clumpiness -any,
        BiobaseNewick >=0.0.0.2,
        aeson >=1.2.2.0,
        bytestring >=0.10.8.2,
        clumpiness >=0.17.0.0,
        containers >=0.5.10.2,
        optparse-applicative >=0.14.0.0,
        text >=1.2.2.2,
        tree-fun >=0.8.1.0,
        unordered-containers >=0.2.8.0