diversity: Return the diversity at each position for all sequences in a fasta file
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Warnings:
- Exposed modules use unallocated top-level names: Diversity
Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.
Properties
| Versions | 0.2.0.5, 0.2.0.5, 0.3.0.0, 0.3.4.0, 0.3.4.1, 0.3.5.0, 0.3.5.1, 0.4.0.0, 0.4.0.1, 0.4.0.2, 0.5.0.0, 0.5.0.2, 0.6.0.0, 0.6.0.1, 0.6.0.2, 0.6.2.0, 0.6.2.1, 0.6.3.0, 0.7.0.0, 0.7.0.1, 0.7.0.3, 0.7.1.0, 0.7.1.1, 0.8.0.0, 0.8.0.1, 0.8.0.2, 0.8.1.0 |
|---|---|
| Change log | None available |
| Dependencies | base (>=4.6 && <4.8), containers (>=0.5 && <0.6), diversity, fasta (>=0.5.1.2 && <0.6), math-functions (>=0.1 && <0.2), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), split (>=0.2 && <0.3) [details] |
| License | GPL-2.0-only |
| Author | Gregory W. Schwartz |
| Maintainer | gregory.schwartz@drexel.edu |
| Category | Bioinformatics |
| Home page | https://github.com/GregorySchwartz/diversity |
| Uploaded | by GregorySchwartz at 2014-12-09T18:40:03Z |
Modules
[Index]
Downloads
- diversity-0.2.0.5.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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