damage-patterns: analyses substitution patterns in aligned DNA reads
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Warnings:
- From version 1.23 cabal supports specifiying explicit dependencies for Custom setup scripts. Consider using cabal-version >= 1.23 and adding a 'custom-setup' section with a 'setup-depends' field that specifies the dependencies of the Setup.hs script itself. The 'setup-depends' field uses the same syntax as 'build-depends', so a simple example would be 'setup-depends: base, Cabal'.
- 'ghc-options: -fprof*' profiling flags are typically not appropriate for a distributed library package. These flags are useful to profile this package, but when profiling other packages that use this one these flags clutter the profile output with excessive detail. If you think other packages really want to see cost centres from this package then use '-fprof-auto-exported' which puts cost centres only on exported functions. Alternatively, if you want to use this, make it conditional based on a Cabal configuration flag (with 'manual: True' and 'default: False') and enable that flag during development.
This diagramming tool was used in number of ancient DNA analyses. It has now being separated and somewhat cleaned up, since apparently it will not be thrown away soon.
Properties
| Versions | 0.27 |
|---|---|
| Change log | None available |
| Dependencies | array (>=0.4 && <0.6), base (>=4.2 && <4.10), biohazard (>=0.6.6 && <0.7), bytestring (>=0.9 && <0.11), Chart (>=1.3 && <2.0), Chart-diagrams (>=1.4 && <2.0), containers (>=0.4 && <0.6), diagrams-core (>=1.2 && <2.0), diagrams-lib (>=1.2 && <2.0), diagrams-rasterific (>=1.3 && <2.0), diagrams-svg (>=1.3 && <2.0), directory (>=1.2 && <2.0), filepath (>=1.3 && <1.5), iteratee (>=0.8.9.6 && <0.8.10), JuicyPixels (>=3.1.5 && <3.3), Rasterific (>=0.6.1 && <0.7), transformers (>=0.3 && <0.6), transformers-compat (>=0.4 && <0.5), vector (>=0.9 && <0.11), vector-th-unbox [details] |
| License | GPL-2.0-only |
| Author | Udo Stenzel |
| Maintainer | udo_stenzel@eva.mpg.de |
| Category | Graphics |
| Home page | http://bioinf.eva.mpg.de/damage-patterns |
| Source repo | head: git clone https://bitbucket.org/ustenzel/damage-patterns.git |
| Uploaded | by ustenzel at 2016-05-31T19:49:41Z |
Flags
Automatic Flags
| Name | Description | Default |
|---|---|---|
| chart | Enable graphing, not just stats. | Enabled |
Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info
Downloads
- damage-patterns-0.27.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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