Index
| !! | Bio.Prelude |
| $ | Bio.Prelude |
| $! | Bio.Prelude |
| $> | Bio.Prelude |
| % | Bio.Prelude |
| & | Bio.Prelude |
| && | Bio.Prelude |
| &&& | Bio.Prelude |
| * | Bio.Prelude |
| ** | Bio.Prelude |
| *** | Bio.Prelude |
| *> | Bio.Prelude |
| + | Bio.Prelude |
| ++ | Bio.Prelude |
| +++ | Bio.Prelude |
| - | Bio.Prelude |
| . | Bio.Prelude |
| .&. | Bio.Prelude |
| .|. | Bio.Prelude |
| / | Bio.Prelude |
| /= | Bio.Prelude |
| :!: | Bio.Base, Bio.Prelude |
| :* | Bio.Bam.Rec, Bio.Bam |
| :+ | Bio.Prelude |
| :-> | Bio.Adna |
| :> | Bio.Streaming, Bio.Bam |
| :| | Bio.Prelude |
| :~: | Bio.Prelude |
| :~~: | Bio.Prelude |
| < | Bio.Prelude |
| <#> | Bio.Util.Numeric |
| <$ | Bio.Prelude |
| <$!> | Bio.Prelude |
| <$> | Bio.Prelude |
| <&> | Bio.Prelude |
| <* | Bio.Prelude |
| <**> | Bio.Prelude |
| <*> | Bio.Prelude |
| <+> | Bio.Prelude |
| <<< | Bio.Prelude |
| <<^ | Bio.Prelude |
| <= | Bio.Prelude |
| <=< | Bio.Prelude |
| <> | Bio.Prelude |
| <|> | Bio.Prelude, Bio.Streaming, Bio.Bam |
| =<< | Bio.Prelude |
| == | Bio.Prelude |
| > | Bio.Prelude |
| >= | Bio.Prelude |
| >=> | Bio.Prelude |
| >> | Bio.Prelude |
| >>= | Bio.Prelude |
| >>> | Bio.Prelude |
| >>^ | Bio.Prelude |
| abortParse | Bio.Streaming.Parse |
| abs | Bio.Prelude |
| AbsoluteSeek | Bio.Prelude |
| acos | Bio.Prelude |
| acosh | Bio.Prelude |
| addForeignPtrFinalizer | Bio.Prelude |
| addForeignPtrFinalizerEnv | Bio.Prelude |
| addFragType | Bio.Adna |
| addMVarFinalizer | Bio.Prelude |
| addPG | Bio.Bam.Header, Bio.Bam |
| adjustE | Bio.Bam.Rec, Bio.Bam |
| AD_Seqs | Bio.Bam.Trim, Bio.Bam |
| afford | Bio.Streaming.Furrow |
| AlgConstr | Bio.Prelude |
| AlgRep | Bio.Prelude |
| alignedLength | Bio.Bam.Rec, Bio.Bam |
| Alignment | Bio.Adna |
| alignment | Bio.Prelude |
| alignPtr | Bio.Prelude |
| All | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| all | Bio.Prelude |
| AllocationLimitExceeded | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| allocationLimitExceeded | Bio.Prelude |
| allowInterrupt | Bio.Prelude |
| ALN | Bio.Adna |
| alnFromMd | Bio.Adna |
| AlreadyExists | Bio.Prelude |
| alreadyExistsErrorType | Bio.Prelude |
| alreadyInUseErrorType | Bio.Prelude |
| Alt | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| Alternative | Bio.Prelude, Bio.Streaming, Bio.Bam |
| and | Bio.Prelude |
| annotateIOError | Bio.Prelude |
| Any | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| any | Bio.Prelude |
| Ap | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| ap | Bio.Prelude |
| app | Bio.Prelude |
| appendFile | Bio.Prelude |
| AppendMode | Bio.Prelude |
| appEndo | Bio.Prelude |
| Applicative | Bio.Prelude |
| approxRational | Bio.Prelude |
| ArithException | Bio.Prelude |
| arr | Bio.Prelude |
| ArrayException | Bio.Prelude |
| Arrow | Bio.Prelude |
| ArrowApply | Bio.Prelude |
| ArrowChoice | Bio.Prelude |
| ArrowLoop | Bio.Prelude |
| ArrowMonad | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| ArrowPlus | Bio.Prelude |
| ArrowZero | Bio.Prelude |
| asin | Bio.Prelude |
| asinh | Bio.Prelude |
| assert | Bio.Prelude |
| assertError | Bio.Prelude |
| AssertionFailed | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| asTypeOf | Bio.Prelude |
| asum | Bio.Prelude |
| AsyncException | Bio.Prelude |
| asyncExceptionFromException | Bio.Prelude |
| asyncExceptionToException | Bio.Prelude |
| atan | Bio.Prelude |
| atan2 | Bio.Prelude |
| atanh | Bio.Prelude |
| atomically | Bio.Prelude |
| atomicModifyIORef | Bio.Prelude |
| atomicModifyIORef' | Bio.Prelude |
| atomicWriteIORef | Bio.Prelude |
| atto | Bio.Streaming.Parse |
| a_fragment_type | Bio.Adna |
| a_sequence | Bio.Adna |
| BamHeader | |
| 1 (Type/Class) | Bio.Bam.Header, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Header, Bio.Bam |
| BamIndex | |
| 1 (Type/Class) | Bio.Bam.Index, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Index, Bio.Bam |
| BamKey | |
| 1 (Type/Class) | Bio.Bam.Header, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Header, Bio.Bam |
| BamMeta | |
| 1 (Type/Class) | Bio.Bam.Header, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Header, Bio.Bam |
| BamOtherShit | Bio.Bam.Header, Bio.Bam |
| BamRaw | Bio.Bam.Rec, Bio.Bam |
| bamRaw | Bio.Bam.Rec, Bio.Bam |
| BamRec | |
| 1 (Type/Class) | Bio.Bam.Rec, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| BamSorting | Bio.Bam.Header, Bio.Bam |
| BamSQ | |
| 1 (Type/Class) | Bio.Bam.Header, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Header, Bio.Bam |
| bang | Bio.Adna |
| Base | Bio.Bam.Pileup |
| basecompo3 | Bio.Adna |
| basecompo5 | Bio.Adna |
| BasePile | Bio.Bam.Pileup |
| BB | |
| 1 (Type/Class) | Bio.Streaming.Bgzf |
| 2 (Data Constructor) | Bio.Streaming.Bgzf |
| BclArgs | |
| 1 (Type/Class) | Bio.Streaming.Bgzf |
| 2 (Data Constructor) | Bio.Streaming.Bgzf |
| BclNucsAsc | Bio.Streaming.Bgzf |
| BclNucsAscRev | Bio.Streaming.Bgzf |
| BclNucsBin | Bio.Streaming.Bgzf |
| BclNucsWide | Bio.Streaming.Bgzf |
| BclQualsAsc | Bio.Streaming.Bgzf |
| BclQualsAscRev | Bio.Streaming.Bgzf |
| BclQualsBin | Bio.Streaming.Bgzf |
| BclSpecialType | Bio.Streaming.Bgzf |
| bgunzip | Bio.Streaming.Bgzf |
| BgzfTokens | Bio.Streaming.Bgzf |
| Bifunctor | Bio.Prelude, Bio.Streaming, Bio.Bam |
| bimap | Bio.Prelude, Bio.Streaming, Bio.Bam |
| Bin | Bio.Bam.Rec, Bio.Bam |
| bit | Bio.Prelude |
| bitDefault | Bio.Prelude |
| Bits | Bio.Prelude |
| bitSize | Bio.Prelude |
| bitSizeMaybe | Bio.Prelude |
| BlockedIndefinitelyOnMVar | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| blockedIndefinitelyOnMVar | Bio.Prelude |
| BlockedIndefinitelyOnSTM | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| blockedIndefinitelyOnSTM | Bio.Prelude |
| BlockedOnBlackHole | Bio.Prelude |
| BlockedOnException | Bio.Prelude |
| BlockedOnForeignCall | Bio.Prelude |
| BlockedOnMVar | Bio.Prelude |
| BlockedOnOther | Bio.Prelude |
| BlockedOnSTM | Bio.Prelude |
| BlockReason | Bio.Prelude |
| Bool | Bio.Prelude |
| bool | Bio.Prelude |
| Both | Bio.TwoBit |
| Bounded | Bio.Prelude |
| bracket | Bio.Prelude |
| bracketOnError | Bio.Prelude |
| bracket_ | Bio.Prelude |
| break | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| BrokenMD | |
| 1 (Type/Class) | Bio.Bam.Rmdup |
| 2 (Data Constructor) | Bio.Bam.Rmdup |
| BrokenRecord | |
| 1 (Type/Class) | Bio.Bam.Rec, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| br_copy | Bio.Bam.Rec, Bio.Bam |
| buffer | Bio.Streaming.Bgzf |
| bwa_cal_maxdiff | Bio.Adna |
| Bytes | Bio.Prelude |
| ByteStream | Bio.Streaming.Bytes, Bio.Streaming, Bio.Bam |
| byteSwap16 | Bio.Prelude |
| byteSwap32 | Bio.Prelude |
| byteSwap64 | Bio.Prelude |
| b_cigar | Bio.Bam.Rec, Bio.Bam |
| b_exts | Bio.Bam.Rec, Bio.Bam |
| b_flag | Bio.Bam.Rec, Bio.Bam |
| b_isize | Bio.Bam.Rec, Bio.Bam |
| b_mapq | Bio.Bam.Rec, Bio.Bam |
| b_mpos | Bio.Bam.Rec, Bio.Bam |
| b_mrnm | Bio.Bam.Rec, Bio.Bam |
| b_pos | Bio.Bam.Rec, Bio.Bam |
| b_qname | Bio.Bam.Rec, Bio.Bam |
| b_qual | Bio.Bam.Rec, Bio.Bam |
| b_rname | Bio.Bam.Rec, Bio.Bam |
| b_seq | Bio.Bam.Rec, Bio.Bam |
| b_virtual_offset | Bio.Bam.Rec, Bio.Bam |
| c2w | Bio.Util.Text, Bio.Prelude |
| CallStats | |
| 1 (Type/Class) | Bio.Bam.Pileup |
| 2 (Data Constructor) | Bio.Bam.Pileup |
| cannotCompactFunction | Bio.Prelude |
| cannotCompactMutable | Bio.Prelude |
| cannotCompactPinned | Bio.Prelude |
| cast | Bio.Prelude |
| castForeignPtr | Bio.Prelude |
| castFunPtr | Bio.Prelude |
| castFunPtrToPtr | Bio.Prelude |
| castPtr | Bio.Prelude |
| castPtrToFunPtr | Bio.Prelude |
| castPtrToStablePtr | Bio.Prelude |
| castStablePtrToPtr | Bio.Prelude |
| catch | Bio.Prelude |
| catchAll | Bio.Prelude |
| catches | Bio.Prelude |
| catchIf | Bio.Prelude |
| catchIOError | Bio.Prelude |
| catchJust | Bio.Prelude |
| catchSTM | Bio.Prelude |
| Category | Bio.Prelude |
| catMaybes | Bio.Prelude |
| ceiling | Bio.Prelude |
| Centi | Bio.Prelude |
| Chan | Bio.Prelude |
| Char | |
| 1 (Type/Class) | Bio.Prelude |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| CharConstr | Bio.Prelude |
| CharRep | Bio.Prelude |
| cheap_collapse | Bio.Bam.Rmdup |
| cheap_collapse_keep | Bio.Bam.Rmdup |
| check_sort | Bio.Bam.Rmdup |
| childHandler | Bio.Prelude |
| choose | Bio.Util.Numeric |
| chr | Bio.Prelude |
| Chunk | Bio.Streaming.Bytes |
| chunk | Bio.Streaming.Bytes |
| chunksOf | Bio.Streaming, Bio.Bam |
| Cigar | Bio.Bam.Rec, Bio.Bam |
| CigOp | Bio.Bam.Rec, Bio.Bam |
| cis | Bio.Prelude |
| clampPosition | Bio.TwoBit |
| clearBit | Bio.Prelude |
| closeFdWith | Bio.Prelude |
| ClosePunctuation | Bio.Prelude |
| Collapse | Bio.Bam.Rmdup |
| CompactionFailed | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| compare | Bio.Prelude |
| compareNames | Bio.Bam.Header, Bio.Bam |
| comparing | Bio.Prelude |
| compl | Bio.Base, Bio.Prelude |
| complement | Bio.Prelude |
| complementBit | Bio.Prelude |
| Complete | Bio.Adna |
| Complex | Bio.Prelude |
| complexEntropy | Bio.Bam.Filter, Bio.Bam |
| complexSimple | Bio.Bam.Filter, Bio.Bam |
| complMat | Bio.Adna |
| compls | Bio.Base, Bio.Prelude |
| Compose | |
| 1 (Data Constructor) | Bio.Streaming, Bio.Bam |
| 2 (Type/Class) | Bio.Streaming, Bio.Bam |
| CompositionStats | Bio.Adna |
| CompressionError | |
| 1 (Type/Class) | Bio.Streaming.Bgzf |
| 2 (Data Constructor) | Bio.Streaming.Bgzf |
| concat | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| concatBuilders | Bio.Streaming.Bytes |
| concatInputs | Bio.Bam.Reader, Bio.Bam |
| concatMap | Bio.Prelude |
| concats | Bio.Streaming, Bio.Bam |
| ConIndex | Bio.Prelude |
| conjugate | Bio.Prelude |
| ConnectorPunctuation | Bio.Prelude |
| cons | Bio.Streaming.Bytes |
| consChunk | Bio.Streaming.Bytes |
| consChunkOff | Bio.Streaming.Bytes |
| Const | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| const | Bio.Prelude |
| Constr | Bio.Prelude |
| constrFields | Bio.Prelude |
| constrFixity | Bio.Prelude |
| constrIndex | Bio.Prelude |
| ConstrRep | Bio.Prelude |
| constrRep | Bio.Prelude |
| constrType | Bio.Prelude |
| cons_collapse | Bio.Bam.Rmdup |
| cons_collapse_keep | Bio.Bam.Rmdup |
| Control | Bio.Prelude |
| Coordinate | Bio.Bam.Header, Bio.Bam |
| coordinates | Bio.Bam.Reader, Bio.Bam |
| copy | Bio.Streaming.Bytes |
| cos | Bio.Prelude |
| cosh | Bio.Prelude |
| countLeadingZeros | Bio.Prelude |
| countTrailingZeros | Bio.Prelude |
| createMmapFile | Bio.Util.MMap |
| CurrencySymbol | Bio.Prelude |
| curry | Bio.Prelude |
| cutoff | Bio.Streaming, Bio.Bam |
| cycle | Bio.Prelude |
| DamagedBase | Bio.Bam.Pileup |
| DamageModel | Bio.Adna |
| DamageParameters | Bio.Adna |
| damagePatternsIter | Bio.Adna |
| damagePatternsIter2Bit | Bio.Adna |
| damagePatternsIterMD | Bio.Adna |
| DashPunctuation | Bio.Prelude |
| Data | Bio.Prelude |
| dataCast1 | Bio.Prelude |
| dataCast2 | Bio.Prelude |
| DataRep | Bio.Prelude |
| DataType | Bio.Prelude |
| dataTypeConstrs | Bio.Prelude |
| dataTypeName | Bio.Prelude |
| dataTypeOf | Bio.Prelude |
| dataTypeRep | Bio.Prelude |
| DB | Bio.Bam.Pileup |
| db_call | Bio.Bam.Pileup |
| db_dmg_pos | Bio.Bam.Pileup |
| db_dmg_tk | Bio.Bam.Pileup |
| db_qual | Bio.Bam.Pileup |
| db_ref | Bio.Bam.Pileup |
| Deadlock | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| Debug | Control.Monad.Log, Bio.Prelude |
| Deci | Bio.Prelude |
| DecimalNumber | Bio.Prelude |
| decodeBam | Bio.Bam.Reader, Bio.Bam |
| decodeBamFile | Bio.Bam.Reader, Bio.Bam |
| decodeBamFiles | Bio.Bam.Reader, Bio.Bam |
| decodeBytes | Bio.Util.Text, Bio.Prelude |
| decodeFloat | Bio.Prelude |
| decodePlainBam | Bio.Bam.Reader, Bio.Bam |
| decodePlainSam | Bio.Bam.Reader, Bio.Bam |
| decompose | Bio.Streaming, Bio.Bam |
| decompressGzip | Bio.Util.Text, Bio.Prelude |
| DecompressionError | |
| 1 (Type/Class) | Bio.Streaming.Bgzf |
| 2 (Data Constructor) | Bio.Streaming.Bgzf |
| default_fwd_adapters | Bio.Bam.Trim, Bio.Bam |
| default_rev_adapters | Bio.Bam.Trim, Bio.Bam |
| Del | Bio.Bam.Rec, Bio.Bam |
| Del' | Bio.Bam.Rmdup |
| delays | Bio.Streaming, Bio.Bam |
| delete | Bio.Prelude |
| deleteBy | Bio.Prelude |
| deleted_bases | Bio.Bam.Pileup |
| deleteE | Bio.Bam.Rec, Bio.Bam |
| deleteFirstsBy | Bio.Prelude |
| denominator | Bio.Prelude |
| Denormal | Bio.Prelude |
| depth | Bio.Bam.Index, Bio.Bam |
| deRefStablePtr | Bio.Prelude |
| destroy | Bio.Streaming, Bio.Bam |
| die | Bio.Prelude |
| digitToInt | Bio.Prelude |
| disableAllocationLimit | Bio.Prelude |
| displayException | Bio.Prelude |
| dissect | Bio.Bam.Pileup |
| distinctBin | Bio.Bam.Header, Bio.Bam |
| distribute | Bio.Streaming, Bio.Bam |
| div | Bio.Prelude |
| div' | Bio.Prelude |
| DivideByZero | Bio.Prelude |
| divMod | Bio.Prelude |
| divMod' | Bio.Prelude |
| DmgStats | |
| 1 (Type/Class) | Bio.Adna |
| 2 (Data Constructor) | Bio.Adna |
| DmgToken | |
| 1 (Type/Class) | Bio.Bam.Pileup |
| 2 (Data Constructor) | Bio.Bam.Pileup |
| doesNotExistErrorType | Bio.Prelude |
| Double | Bio.Prelude |
| Down | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| DP | Bio.Adna |
| dp_alpha | Bio.Adna |
| dp_alpha3 | Bio.Adna |
| dp_alpha5 | Bio.Adna |
| dp_beta | Bio.Adna |
| dp_beta3 | Bio.Adna |
| dp_beta5 | Bio.Adna |
| dp_gc_frac | Bio.Adna |
| dp_mu | Bio.Adna |
| dp_nu | Bio.Adna |
| drain | Bio.Streaming.Furrow |
| drop | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| 3 (Function) | Bio.Streaming.Parse |
| dropLine | Bio.Streaming.Parse |
| dropWhile | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| dropWhileEnd | Bio.Prelude |
| dsd_delta | Bio.Adna |
| dsd_lambda | Bio.Adna |
| dsd_sigma | Bio.Adna |
| Dual | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| dupChan | Bio.Prelude |
| Dynamic | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| dynApp | Bio.Prelude |
| dynApply | Bio.Prelude |
| dynTypeRep | Bio.Prelude |
| E0 | Bio.Prelude |
| E1 | Bio.Prelude |
| E12 | Bio.Prelude |
| E2 | Bio.Prelude |
| E3 | Bio.Prelude |
| E6 | Bio.Prelude |
| E9 | Bio.Prelude |
| each | Bio.Streaming, Bio.Bam |
| ECig | Bio.Bam.Rmdup |
| effect | Bio.Streaming, Bio.Bam |
| effects | Bio.Streaming.Bytes |
| eflagAlternative | Bio.Bam.Header, Bio.Bam |
| eflagExactIndex | Bio.Bam.Header, Bio.Bam |
| eflagMerged | Bio.Bam.Header, Bio.Bam |
| eflagTrimmed | Bio.Bam.Header, Bio.Bam |
| Either | Bio.Prelude |
| either | Bio.Prelude |
| elem | Bio.Prelude |
| elemIndex | Bio.Prelude |
| elemIndices | Bio.Prelude |
| embed | Bio.Streaming, Bio.Bam |
| empDamage | Bio.Adna |
| Empty | Bio.Streaming.Bytes |
| empty | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| EmptyRecord | |
| 1 (Type/Class) | Bio.Bam.Fastq, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Fastq, Bio.Bam |
| enableAllocationLimit | Bio.Prelude |
| EnclosingMark | Bio.Prelude |
| encodeBamWith | Bio.Bam.Writer, Bio.Bam |
| encodeBgzf | Bio.Streaming.Bgzf |
| encodeBytes | Bio.Util.Text, Bio.Prelude |
| encodeFloat | Bio.Prelude |
| end | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| Endo | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| EndOfRead | Bio.Bam.Pileup |
| ensureIOManagerIsRunning | Bio.Prelude |
| Enum | Bio.Prelude |
| enumFrom | Bio.Prelude |
| enumFromThen | Bio.Prelude |
| enumFromThenTo | Bio.Prelude |
| enumFromTo | Bio.Prelude |
| eofErrorType | Bio.Prelude |
| EofException | |
| 1 (Type/Class) | Bio.Streaming.Parse |
| 2 (Data Constructor) | Bio.Streaming.Parse |
| EQ | Bio.Prelude |
| Eq | Bio.Prelude |
| eqStableName | Bio.Prelude |
| eqT | Bio.Prelude |
| Error | Control.Monad.Log, Bio.Prelude |
| error | Bio.Prelude |
| ErrorCall | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| ErrorCallWithLocation | Bio.Prelude |
| errorContexts | Bio.Streaming.Parse |
| errorMessage | Bio.Streaming.Parse |
| errorWithoutStackTrace | Bio.Prelude |
| error_level | Control.Monad.Log |
| estimateComplexity | Bio.Util.Numeric |
| evaluate | Bio.Prelude |
| even | Bio.Prelude |
| evertStream | Bio.Streaming.Furrow |
| Exception | Bio.Prelude |
| execWithParser | Control.Monad.Log |
| execWithParser_ | Control.Monad.Log, Bio.Prelude |
| ExitCase | Bio.Prelude |
| ExitCaseAbort | Bio.Prelude |
| ExitCaseException | Bio.Prelude |
| ExitCaseSuccess | Bio.Prelude |
| ExitCode | Bio.Prelude |
| ExitFailure | Bio.Prelude |
| ExitSuccess | Bio.Prelude |
| exp | Bio.Prelude |
| expand | Bio.Streaming, Bio.Bam |
| expandBuffer | Bio.Streaming.Bgzf |
| expandPost | Bio.Streaming, Bio.Bam |
| expm1 | Bio.Util.Numeric |
| exponent | Bio.Prelude |
| Ext | Bio.Bam.Rec, Bio.Bam |
| extAsInt | Bio.Bam.Rec, Bio.Bam |
| extAsString | Bio.Bam.Rec, Bio.Bam |
| extendRange | Bio.Base, Bio.Prelude |
| Extensions | Bio.Bam.Rec, Bio.Bam |
| extensions | Bio.Bam.Index, Bio.Bam |
| fail | Bio.Prelude |
| False | Bio.Prelude |
| FilePath | Bio.Prelude |
| fillBuffer | Bio.Streaming.Bgzf |
| filter | Bio.Prelude |
| filterM | Bio.Prelude |
| filterPairs | Bio.Bam.Filter, Bio.Bam |
| finalizeForeignPtr | Bio.Prelude |
| FinalizerEnvPtr | Bio.Prelude |
| FinalizerPtr | Bio.Prelude |
| finally | Bio.Prelude |
| FinalQuote | Bio.Prelude |
| find | Bio.Prelude |
| findIndex | Bio.Prelude |
| findIndices | Bio.Prelude |
| find_merge | Bio.Bam.Trim, Bio.Bam |
| find_trim | Bio.Bam.Trim, Bio.Bam |
| FiniteBits | Bio.Prelude |
| finiteBitSize | Bio.Prelude |
| First | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| first | Bio.Prelude, Bio.Streaming, Bio.Bam |
| fix | Bio.Prelude |
| Fixed | Bio.Prelude |
| FixIOException | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| Fixity | Bio.Prelude |
| fixST | Bio.Prelude |
| fixupBwaFlags | Bio.Bam.Evan |
| fixupFlagAbuse | Bio.Bam.Evan |
| flagAuxillary | Bio.Bam.Header, Bio.Bam |
| flagDuplicate | Bio.Bam.Header, Bio.Bam |
| flagFailsQC | Bio.Bam.Header, Bio.Bam |
| flagFirstMate | Bio.Bam.Header, Bio.Bam |
| flagMateReversed | Bio.Bam.Header, Bio.Bam |
| flagMateUnmapped | Bio.Bam.Header, Bio.Bam |
| flagPaired | Bio.Bam.Header, Bio.Bam |
| flagProperlyPaired | Bio.Bam.Header, Bio.Bam |
| flagReversed | Bio.Bam.Header, Bio.Bam |
| flagSecondary | Bio.Bam.Header, Bio.Bam |
| flagSecondMate | Bio.Bam.Header, Bio.Bam |
| flagSupplementary | Bio.Bam.Header, Bio.Bam |
| flagUnmapped | Bio.Bam.Header, Bio.Bam |
| flip | Bio.Prelude |
| Float | |
| 1 (Type/Class) | Bio.Prelude |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| FloatArr | Bio.Bam.Rec, Bio.Bam |
| FloatConstr | Bio.Prelude |
| floatDigits | Bio.Prelude |
| Floating | Bio.Prelude |
| floatRadix | Bio.Prelude |
| floatRange | Bio.Prelude |
| FloatRep | Bio.Prelude |
| floatToDigits | Bio.Prelude |
| floor | Bio.Prelude |
| fmap | Bio.Prelude |
| fmapDefault | Bio.Prelude |
| fold | Bio.Prelude |
| Foldable | Bio.Prelude |
| foldl | Bio.Prelude |
| foldl' | Bio.Prelude |
| foldl1 | Bio.Prelude |
| foldl1' | Bio.Prelude |
| foldlM | Bio.Prelude |
| foldM | Bio.Prelude |
| foldMap | Bio.Prelude |
| foldMapDefault | Bio.Prelude |
| foldM_ | Bio.Prelude |
| foldr | Bio.Prelude |
| foldr' | Bio.Prelude |
| foldr1 | Bio.Prelude |
| foldrM | Bio.Prelude |
| for | Bio.Prelude |
| ForeignPtr | Bio.Prelude |
| forever | Bio.Prelude |
| forkFinally | Bio.Prelude |
| forkIO | Bio.Prelude |
| forkIOWithUnmask | Bio.Prelude |
| forkOn | Bio.Prelude |
| forkOnWithUnmask | Bio.Prelude |
| forkOS | Bio.Prelude |
| forkOSWithUnmask | Bio.Prelude |
| forM | Bio.Prelude |
| Format | Bio.Prelude |
| forM_ | Bio.Prelude |
| for_ | Bio.Prelude |
| Fractional | Bio.Prelude |
| FragType | Bio.Adna |
| freeHaskellFunPtr | Bio.Prelude |
| freeStablePtr | Bio.Prelude |
| freezeMats | Bio.Adna |
| from1 | Bio.Prelude |
| fromChunks | Bio.Streaming.Bytes |
| fromConstr | Bio.Prelude |
| fromConstrB | Bio.Prelude |
| fromConstrM | Bio.Prelude |
| fromDmgToken | Bio.Bam.Pileup |
| fromDyn | Bio.Prelude |
| fromDynamic | Bio.Prelude |
| fromEnum | Bio.Prelude |
| fromException | Bio.Prelude |
| fromInteger | Bio.Prelude |
| fromIntegral | Bio.Prelude |
| fromJust | Bio.Prelude |
| fromLazy | Bio.Streaming.Bytes |
| fromLeft | Bio.Prelude |
| fromList | Bio.Bam.Regions |
| fromMaybe | Bio.Prelude |
| fromProb | Bio.Base, Bio.Prelude |
| fromQual | Bio.Base, Bio.Prelude |
| fromQualRaised | Bio.Base, Bio.Prelude |
| fromRat | Bio.Prelude |
| fromRational | Bio.Prelude |
| fromRight | Bio.Prelude |
| fromString | Bio.Prelude |
| fst | Bio.Prelude |
| fst_np | Bio.Adna |
| fullErrorType | Bio.Prelude |
| Functor | Bio.Prelude |
| FunPtr | Bio.Prelude |
| funResultTy | Bio.Prelude |
| Furrow | |
| 1 (Type/Class) | Bio.Streaming.Furrow |
| 2 (Data Constructor) | Bio.Streaming.Furrow |
| gap | Bio.Base, Bio.Prelude |
| gcast | Bio.Prelude |
| gcast1 | Bio.Prelude |
| gcast2 | Bio.Prelude |
| gcd | Bio.Prelude |
| GenDamageParameters | Bio.Adna |
| generalBracket | Bio.Prelude |
| GeneralCategory | Bio.Prelude |
| generalCategory | Bio.Prelude |
| Generic | Bio.Prelude |
| Generic1 | Bio.Prelude |
| genericDrop | Bio.Prelude |
| genericIndex | Bio.Prelude |
| genericLength | Bio.Prelude |
| genericReplicate | Bio.Prelude |
| genericSplitAt | Bio.Prelude |
| genericTake | Bio.Prelude |
| getAll | Bio.Prelude |
| getAllocationCounter | Bio.Prelude |
| getAlt | Bio.Prelude |
| getAny | Bio.Prelude |
| getAp | Bio.Prelude |
| getArgs | Bio.Prelude |
| getBamMeta | Bio.Bam.Reader, Bio.Bam |
| getBamRaw | Bio.Bam.Reader, Bio.Bam |
| getBgzfHdr | Bio.Streaming.Bgzf |
| getByte | Bio.Streaming.Parse |
| getChanContents | Bio.Prelude |
| getChar | Bio.Prelude |
| getCompose | Bio.Streaming, Bio.Bam |
| getConst | Bio.Prelude |
| getContents | Bio.Prelude |
| getDual | Bio.Prelude |
| getEnv | Bio.Prelude |
| getEnvironment | Bio.Prelude |
| getExecutablePath | Bio.Prelude |
| getFirst | Bio.Prelude |
| getFragment | Bio.TwoBit |
| getFwdSubseqV | Bio.TwoBit |
| getFwdSubseqWith | Bio.TwoBit |
| getLast | Bio.Prelude |
| getLazySubseq | Bio.TwoBit |
| getLine | Bio.Prelude |
| getMaskingState | Bio.Prelude |
| getMd | Bio.Bam.Rec, Bio.Bam |
| getNumCapabilities | Bio.Prelude |
| getNumProcessors | Bio.Prelude |
| getProduct | Bio.Prelude |
| getProgName | Bio.Prelude |
| getRandomSeq | Bio.TwoBit |
| getRef | Bio.Bam.Header, Bio.Bam |
| getSamRec | Bio.Bam.Reader, Bio.Bam |
| getSeqLength | Bio.TwoBit |
| getSeqnames | Bio.TwoBit |
| getString | Bio.Streaming.Parse |
| getSubseq | Bio.TwoBit |
| getSubseqAscii | Bio.TwoBit |
| getSubseqMasked | Bio.TwoBit |
| getSubseqWith | Bio.TwoBit |
| getSum | Bio.Prelude |
| getUncaughtExceptionHandler | Bio.Prelude |
| getWord32 | Bio.Streaming.Parse |
| getWord64 | Bio.Streaming.Parse |
| getZipList | Bio.Prelude |
| gfoldl | Bio.Prelude |
| Globally | Bio.Align |
| gmapM | Bio.Prelude |
| gmapMo | Bio.Prelude |
| gmapMp | Bio.Prelude |
| gmapQ | Bio.Prelude |
| gmapQi | Bio.Prelude |
| gmapQl | Bio.Prelude |
| gmapQr | Bio.Prelude |
| gmapT | Bio.Prelude |
| Go | Bio.Streaming.Bytes |
| group | Bio.Prelude |
| groupBy | Bio.Prelude |
| Grouped | Bio.Bam.Header, Bio.Bam |
| groups | Bio.Streaming, Bio.Bam |
| groupWith | Bio.Prelude |
| GT | Bio.Prelude |
| guard | Bio.Prelude |
| guardRefCompat | Bio.Bam.Reader, Bio.Bam |
| gunfold | Bio.Prelude |
| gunzip | Bio.Streaming.Bytes |
| gunzipWith | Bio.Streaming.Bytes |
| gzip | Bio.Streaming.Bytes |
| Handle | Bio.Prelude |
| handle | Bio.Prelude |
| handleAll | Bio.Prelude |
| handleIf | Bio.Prelude |
| handleIOError | Bio.Prelude |
| handleJust | Bio.Prelude |
| Handler | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| HandlerFun | Bio.Prelude |
| Hard | Bio.TwoBit |
| HardwareFault | Bio.Prelude |
| hash | Bio.Prelude |
| Hashable | Bio.Prelude |
| HashMap | Bio.Prelude |
| HashSet | Bio.Prelude |
| hashStableName | Bio.Prelude |
| hashUnique | Bio.Prelude |
| hashWithSalt | Bio.Prelude |
| HasPrefix | Bio.Align |
| HasResolution | Bio.Prelude |
| hClose | Bio.Prelude |
| hdr_other_shit | Bio.Bam.Header, Bio.Bam |
| hdr_sorting | Bio.Bam.Header, Bio.Bam |
| hdr_version | Bio.Bam.Header, Bio.Bam |
| head | Bio.Prelude |
| HeapOverflow | Bio.Prelude |
| heapOverflow | Bio.Prelude |
| hFlush | Bio.Prelude |
| hGetContents | Bio.Streaming.Bytes |
| hGetContentsN | Bio.Streaming.Bytes |
| HMa | Bio.Bam.Rec, Bio.Bam |
| HMa' | Bio.Bam.Rmdup |
| hoist | Bio.Streaming, Bio.Bam |
| hoistUnexposed | Bio.Streaming, Bio.Bam |
| hPrintf | Bio.Prelude |
| hPut | Bio.Streaming.Bytes |
| HRefl | Bio.Prelude |
| hSeek | Bio.Prelude |
| id | Bio.Prelude |
| Identity | |
| 1 (Data Constructor) | Bio.Streaming, Bio.Bam |
| 2 (Type/Class) | Bio.Streaming, Bio.Bam |
| IllegalOperation | Bio.Prelude |
| illegalOperationErrorType | Bio.Prelude |
| imagPart | Bio.Prelude |
| InappropriateType | Bio.Prelude |
| IncoherentQualities | |
| 1 (Type/Class) | Bio.Bam.Fastq, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Fastq, Bio.Bam |
| IncompatibleRefs | |
| 1 (Type/Class) | Bio.Bam.Reader, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Reader, Bio.Bam |
| IncongruentQualities | |
| 1 (Type/Class) | Bio.Bam.Fastq, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Fastq, Bio.Bam |
| Indel | Bio.Bam.Pileup |
| IndelPile | Bio.Bam.Pileup |
| IndelVariant | |
| 1 (Type/Class) | Bio.Bam.Pileup |
| 2 (Data Constructor) | Bio.Bam.Pileup |
| index | Bio.Prelude |
| indexConstr | Bio.Prelude |
| IndexFormatError | |
| 1 (Type/Class) | Bio.Bam.Index, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Index, Bio.Bam |
| IndexOutOfBounds | Bio.Prelude |
| Infix | Bio.Prelude |
| Info | Control.Monad.Log, Bio.Prelude |
| init | Bio.Prelude |
| InitialQuote | Bio.Prelude |
| inits | Bio.Prelude |
| InL | Bio.Streaming, Bio.Bam |
| inline | Bio.Prelude |
| InR | Bio.Streaming, Bio.Bam |
| inRange | Bio.Prelude |
| Ins | Bio.Bam.Rec, Bio.Bam |
| Ins' | Bio.Bam.Rmdup |
| insert | Bio.Prelude |
| insertBy | Bio.Prelude |
| insertE | Bio.Bam.Rec, Bio.Bam |
| inserted_bases | Bio.Bam.Pileup |
| insideRange | Bio.Base, Bio.Prelude |
| inspect | Bio.Streaming, Bio.Bam |
| Int | |
| 1 (Type/Class) | Bio.Prelude |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| Int16 | Bio.Prelude |
| Int32 | Bio.Prelude |
| Int64 | Bio.Prelude |
| Int8 | Bio.Prelude |
| IntArr | Bio.Bam.Rec, Bio.Bam |
| IntConstr | Bio.Prelude |
| Integer | Bio.Prelude |
| Integral | Bio.Prelude |
| interact | Bio.Prelude |
| intercalate | Bio.Prelude |
| intercalates | Bio.Streaming, Bio.Bam |
| interleaves | Bio.Streaming, Bio.Bam |
| InternalError | Bio.Bam.Rmdup |
| Interrupted | Bio.Prelude |
| interruptible | Bio.Prelude |
| intersect | Bio.Prelude |
| intersectBy | Bio.Prelude |
| intersperse | Bio.Prelude |
| IntMap | Bio.Prelude |
| IntPtr | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| intPtrToPtr | Bio.Prelude |
| IntRep | Bio.Prelude |
| IntSet | Bio.Prelude |
| intToDigit | Bio.Prelude |
| InvalidArgument | Bio.Prelude |
| invalidPos | Bio.Bam.Header, Bio.Bam |
| invalidRefseq | Bio.Bam.Header, Bio.Bam |
| invnormcdf | Bio.Util.Numeric |
| IO | Bio.Prelude |
| ioeGetErrorString | Bio.Prelude |
| ioeGetErrorType | Bio.Prelude |
| ioeGetFileName | Bio.Prelude |
| ioeGetHandle | Bio.Prelude |
| ioeGetLocation | Bio.Prelude |
| IOError | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| ioError | Bio.Prelude |
| IOErrorType | Bio.Prelude |
| ioeSetErrorString | Bio.Prelude |
| ioeSetErrorType | Bio.Prelude |
| ioeSetFileName | Bio.Prelude |
| ioeSetHandle | Bio.Prelude |
| ioeSetLocation | Bio.Prelude |
| IOException | Bio.Prelude |
| ioException | Bio.Prelude |
| ioe_description | Bio.Prelude |
| ioe_errno | Bio.Prelude |
| ioe_filename | Bio.Prelude |
| ioe_handle | Bio.Prelude |
| ioe_location | Bio.Prelude |
| ioe_type | Bio.Prelude |
| ioManagerCapabilitiesChanged | Bio.Prelude |
| IOMode | Bio.Prelude |
| IORef | Bio.Prelude |
| isAlgType | Bio.Prelude |
| isAlpha | Bio.Prelude |
| isAlphaNum | Bio.Prelude |
| isAlreadyExistsError | Bio.Prelude |
| isAlreadyExistsErrorType | Bio.Prelude |
| isAlreadyInUseError | Bio.Prelude |
| isAlreadyInUseErrorType | Bio.Prelude |
| isAlternative | Bio.Bam.Rec, Bio.Bam |
| isAscii | Bio.Prelude |
| isAsciiLower | Bio.Prelude |
| isAsciiUpper | Bio.Prelude |
| IsBamRec | Bio.Bam.Writer, Bio.Bam |
| isBase | Bio.Base, Bio.Prelude |
| isControl | Bio.Prelude |
| isCurrentThreadBound | Bio.Prelude |
| isDenormalized | Bio.Prelude |
| isDigit | Bio.Prelude |
| isDoesNotExistError | Bio.Prelude |
| isDoesNotExistErrorType | Bio.Prelude |
| isDuplicate | Bio.Bam.Rec, Bio.Bam |
| isEmptyMVar | Bio.Prelude |
| isEOFError | Bio.Prelude |
| isEOFErrorType | Bio.Prelude |
| isExactIndex | Bio.Bam.Rec, Bio.Bam |
| isFailsQC | Bio.Bam.Rec, Bio.Bam |
| isFinished | Bio.Streaming.Parse |
| isFirstMate | Bio.Bam.Rec, Bio.Bam |
| isFullError | Bio.Prelude |
| isFullErrorType | Bio.Prelude |
| isGap | Bio.Base, Bio.Prelude |
| isHexDigit | Bio.Prelude |
| isIEEE | Bio.Prelude |
| isIllegalOperation | Bio.Prelude |
| isIllegalOperationErrorType | Bio.Prelude |
| isInfinite | Bio.Prelude |
| isInfixOf | Bio.Prelude |
| isJust | Bio.Prelude |
| isKnownMapq | Bio.Bam.Header, Bio.Bam |
| isLatin1 | Bio.Prelude |
| isLeft | Bio.Prelude |
| isLetter | Bio.Prelude |
| isLower | Bio.Prelude |
| isMark | Bio.Prelude |
| isMateReversed | Bio.Bam.Rec, Bio.Bam |
| isMateUnmapped | Bio.Bam.Rec, Bio.Bam |
| isMerged | Bio.Bam.Rec, Bio.Bam |
| isNaN | Bio.Prelude |
| isNegativeZero | Bio.Prelude |
| isNorepType | Bio.Prelude |
| isNothing | Bio.Prelude |
| isNumber | Bio.Prelude |
| isOctDigit | Bio.Prelude |
| isolate | Bio.Streaming.Parse |
| isPaired | Bio.Bam.Rec, Bio.Bam |
| isPermissionError | Bio.Prelude |
| isPermissionErrorType | Bio.Prelude |
| IsPrefix | Bio.Align |
| isPrefixOf | Bio.Prelude |
| isPrint | Bio.Prelude |
| isProperBase | Bio.Base, Bio.Prelude |
| isProperlyPaired | Bio.Bam.Rec, Bio.Bam |
| isPunctuation | Bio.Prelude |
| isReversed | Bio.Bam.Rec, Bio.Bam |
| isRight | Bio.Prelude |
| isSecondary | Bio.Bam.Rec, Bio.Bam |
| isSecondMate | Bio.Bam.Rec, Bio.Bam |
| isSeparator | Bio.Prelude |
| isSigned | Bio.Prelude |
| isSpace | Bio.Prelude |
| IsString | Bio.Prelude |
| isSubsequenceOf | Bio.Prelude |
| isSuffixOf | Bio.Prelude |
| isSupplementary | Bio.Bam.Rec, Bio.Bam |
| isSymbol | Bio.Prelude |
| isTrimmed | Bio.Bam.Rec, Bio.Bam |
| isUnmapped | Bio.Bam.Rec, Bio.Bam |
| isUpper | Bio.Prelude |
| isUserError | Bio.Prelude |
| isUserErrorType | Bio.Prelude |
| isValidPos | Bio.Bam.Header, Bio.Bam |
| isValidRefseq | Bio.Bam.Header, Bio.Bam |
| iterate | Bio.Prelude |
| iterate' | Bio.Prelude |
| iterT | Bio.Streaming, Bio.Bam |
| iterTM | Bio.Streaming, Bio.Bam |
| Ix | Bio.Prelude |
| join | Bio.Prelude, Bio.Streaming, Bio.Bam |
| JunkFound | |
| 1 (Type/Class) | Bio.Bam.Fastq, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Fastq, Bio.Bam |
| Just | Bio.Prelude |
| killThread | Bio.Prelude |
| Kleisli | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| labelThread | Bio.Prelude |
| Last | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| last | Bio.Prelude |
| lazily | Bio.Streaming, Bio.Bam |
| lazy | Bio.Prelude |
| LazyBytes | Bio.Prelude |
| LazyText | Bio.Prelude |
| lcm | Bio.Prelude |
| Leading | Bio.Adna |
| Left | Bio.Prelude |
| left | Bio.Prelude |
| leftApp | Bio.Prelude |
| lefts | Bio.Prelude |
| length | Bio.Prelude |
| LengthMismatch | |
| 1 (Type/Class) | Bio.Bam.Rec, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| LetterNumber | Bio.Prelude |
| Level | Control.Monad.Log, Bio.Prelude |
| lex | Bio.Prelude |
| lexDigits | Bio.Prelude |
| lexLitChar | Bio.Prelude |
| lift | Bio.Prelude, Bio.Streaming, Bio.Bam |
| liftA | Bio.Prelude |
| liftA2 | Bio.Prelude, Bio.Streaming, Bio.Bam |
| liftA3 | Bio.Prelude, Bio.Streaming, Bio.Bam |
| liftIO | Bio.Prelude, Bio.Streaming, Bio.Bam |
| liftM | Bio.Prelude, Bio.Streaming, Bio.Bam |
| liftM2 | Bio.Prelude, Bio.Streaming, Bio.Bam |
| liftM3 | Bio.Prelude |
| liftM4 | Bio.Prelude |
| liftM5 | Bio.Prelude |
| lines | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| lines' | Bio.Streaming.Bytes |
| LineSeparator | Bio.Prelude |
| LIO | Control.Monad.Log, Bio.Prelude |
| listToMaybe | Bio.Prelude |
| llerp | Bio.Util.Numeric |
| log | Bio.Prelude |
| log1mexp | Bio.Util.Numeric |
| log1p | Bio.Util.Numeric |
| log1pexp | Bio.Util.Numeric |
| logBase | Bio.Prelude |
| Logged | |
| 1 (Type/Class) | Control.Monad.Log |
| 2 (Data Constructor) | Control.Monad.Log |
| LoggingConf | |
| 1 (Type/Class) | Control.Monad.Log |
| 2 (Data Constructor) | Control.Monad.Log |
| logging_level | Control.Monad.Log |
| logMsg | Control.Monad.Log, Bio.Prelude |
| logOptions | Control.Monad.Log |
| logStringLn | Control.Monad.Log, Bio.Prelude |
| logString_ | Control.Monad.Log, Bio.Prelude |
| lookup | Bio.Prelude |
| lookupEnv | Bio.Prelude |
| lookupSequence | Bio.TwoBit |
| loop | Bio.Prelude |
| loop_bcl_special | Bio.Streaming.Bgzf |
| loop_dec_int | Bio.Streaming.Bgzf |
| LossOfPrecision | Bio.Prelude |
| LowercaseLetter | Bio.Prelude |
| lsum | Bio.Util.Numeric |
| LT | Bio.Prelude |
| magnitude | Bio.Prelude |
| makeStableName | Bio.Prelude |
| makeVersion | Bio.Prelude |
| mallocForeignPtr | Bio.Prelude |
| mallocForeignPtrArray | Bio.Prelude |
| mallocForeignPtrArray0 | Bio.Prelude |
| mallocForeignPtrBytes | Bio.Prelude |
| many | Bio.Prelude |
| map | Bio.Prelude |
| mapAccumL | Bio.Prelude |
| mapAccumR | Bio.Prelude |
| mapAndUnzipM | Bio.Prelude |
| mapChunksM_ | Bio.Streaming.Bytes |
| mapException | Bio.Prelude |
| mapM | Bio.Prelude |
| mapMaybe | Bio.Prelude |
| mapM_ | Bio.Prelude |
| mapped | Bio.Streaming, Bio.Bam |
| mappedPost | Bio.Streaming, Bio.Bam |
| mappend | Bio.Prelude |
| maps | Bio.Streaming, Bio.Bam |
| mapsM | Bio.Streaming, Bio.Bam |
| mapsMPost | Bio.Streaming, Bio.Bam |
| mapsM_ | Bio.Streaming, Bio.Bam |
| mapsPost | Bio.Streaming, Bio.Bam |
| mark | Bio.Streaming.Bgzf |
| mark2 | Bio.Streaming.Bgzf |
| Mask | Bio.TwoBit |
| mask | Bio.Prelude |
| MaskedInterruptible | Bio.Prelude |
| MaskedUninterruptible | Bio.Prelude |
| MaskingState | Bio.Prelude |
| mask_ | Bio.Prelude |
| Mat | Bio.Bam.Rec, Bio.Bam |
| Mat' | Bio.Bam.Rmdup |
| Mat44D | |
| 1 (Type/Class) | Bio.Adna |
| 2 (Data Constructor) | Bio.Adna |
| MathSymbol | Bio.Prelude |
| max | Bio.Prelude |
| maxBound | Bio.Prelude |
| maxConstrIndex | Bio.Prelude |
| maximum | Bio.Prelude |
| maximumBy | Bio.Prelude |
| max_log_size | Control.Monad.Log |
| Maybe | Bio.Prelude |
| maybe | Bio.Prelude |
| maybeToList | Bio.Prelude |
| mconcat | Bio.Prelude |
| MdDel | Bio.Bam.Header, Bio.Bam |
| MdNum | Bio.Bam.Header, Bio.Bam |
| MdOp | Bio.Bam.Header, Bio.Bam |
| MdRep | Bio.Bam.Header, Bio.Bam |
| mempty | Bio.Prelude |
| mergeBam | Bio.Bam.Trim, Bio.Bam |
| mergeBlocks | Bio.TwoBit |
| merged_qual | Bio.Bam.Trim, Bio.Bam |
| merged_seq | Bio.Bam.Trim, Bio.Bam |
| mergeInputsOn | Bio.Bam.Reader, Bio.Bam |
| mergeStreams | Bio.Streaming, Bio.Bam |
| mergeStreamsBy | Bio.Streaming, Bio.Bam |
| mergeStreamsOn | Bio.Streaming, Bio.Bam |
| meta_comment | Bio.Bam.Header, Bio.Bam |
| meta_hdr | Bio.Bam.Header, Bio.Bam |
| meta_other_shit | Bio.Bam.Header, Bio.Bam |
| meta_pgs | Bio.Bam.Header, Bio.Bam |
| meta_refs | Bio.Bam.Header, Bio.Bam |
| mfilter | Bio.Prelude |
| mfix | Bio.Prelude |
| MFunctor | Bio.Streaming, Bio.Bam |
| Micro | Bio.Prelude |
| Milli | Bio.Prelude |
| min | Bio.Prelude |
| minBound | Bio.Prelude |
| minimum | Bio.Prelude |
| minimumBy | Bio.Prelude |
| minshift | Bio.Bam.Index, Bio.Bam |
| minusPtr | Bio.Prelude |
| mkCharConstr | Bio.Prelude |
| mkCharType | Bio.Prelude |
| mkConstr | Bio.Prelude |
| mkDataType | Bio.Prelude |
| MkFixed | Bio.Prelude |
| mkFloatType | Bio.Prelude |
| mkFunTy | Bio.Prelude |
| mkIntegralConstr | Bio.Prelude |
| mkIntType | Bio.Prelude |
| mkIOError | Bio.Prelude |
| mkNoRepType | Bio.Prelude |
| mkPolar | Bio.Prelude |
| mkRealConstr | Bio.Prelude |
| mkWeakIORef | Bio.Prelude |
| mkWeakMVar | Bio.Prelude |
| mkWeakThreadId | Bio.Prelude |
| mmapFile | Bio.Util.MMap |
| MMat44D | |
| 1 (Type/Class) | Bio.Adna |
| 2 (Data Constructor) | Bio.Adna |
| MMonad | Bio.Streaming, Bio.Bam |
| mod | Bio.Prelude |
| mod' | Bio.Prelude |
| Mode | Bio.Align |
| ModifierLetter | Bio.Prelude |
| ModifierSymbol | Bio.Prelude |
| modifyIOError | Bio.Prelude |
| modifyIORef | Bio.Prelude |
| modifyIORef' | Bio.Prelude |
| modifyMVar | Bio.Prelude |
| modifyMVarMasked | Bio.Prelude |
| modifyMVarMasked_ | Bio.Prelude |
| modifyMVar_ | Bio.Prelude |
| modifySTRef | Bio.Prelude |
| modifySTRef' | Bio.Prelude |
| Monad | Bio.Prelude |
| MonadCatch | Bio.Prelude |
| MonadFix | Bio.Prelude |
| MonadIO | Bio.Prelude, Bio.Streaming, Bio.Bam |
| MonadLog | Control.Monad.Log, Bio.Prelude |
| MonadMask | Bio.Prelude, Bio.Streaming, Bio.Bam |
| MonadPlus | Bio.Prelude |
| MonadThrow | Bio.Prelude |
| MonadTrans | Bio.Prelude, Bio.Streaming, Bio.Bam |
| Monoid | Bio.Prelude |
| mplus | Bio.Prelude |
| msum | Bio.Prelude |
| MVar | Bio.Prelude |
| mwrap | Bio.Streaming.Bytes |
| myersAlign | Bio.Align |
| myThreadId | Bio.Prelude |
| mzero | Bio.Prelude |
| N | Bio.Base, Bio.Prelude |
| Nano | Bio.Prelude |
| NDP | Bio.Adna |
| negate | Bio.Prelude |
| NestedAtomically | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| never | Bio.Streaming, Bio.Bam |
| newBuffer | Bio.Streaming.Bgzf |
| newChan | Bio.Prelude |
| NewDamage | Bio.Adna |
| NewDamageParameters | Bio.Adna |
| newEmptyMVar | Bio.Prelude |
| newForeignPtr | Bio.Prelude |
| newForeignPtrEnv | Bio.Prelude |
| newForeignPtr_ | Bio.Prelude |
| newIORef | Bio.Prelude |
| newMVar | Bio.Prelude |
| newQSem | Bio.Prelude |
| newQSemN | Bio.Prelude |
| newStablePtr | Bio.Prelude |
| newStablePtrPrimMVar | Bio.Prelude |
| newSTRef | Bio.Prelude |
| newTVar | Bio.Prelude |
| newTVarIO | Bio.Prelude |
| newUnique | Bio.Prelude |
| nextByte | Bio.Streaming.Bytes |
| nextByteOff | Bio.Streaming.Bytes |
| nextChunk | Bio.Streaming.Bytes |
| nextChunkOff | Bio.Streaming.Bytes |
| noDamage | Bio.Adna |
| NoMethodError | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| None | Bio.TwoBit |
| NonEmpty | Bio.Prelude |
| NonSpacingMark | Bio.Prelude |
| NonTermination | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| Nop | Bio.Bam.Rec, Bio.Bam |
| Nop' | Bio.Bam.Rmdup |
| NoRep | Bio.Prelude |
| normalizeTo | Bio.Bam.Rmdup |
| NoSuchThing | Bio.Prelude |
| not | Bio.Prelude |
| NotAssigned | Bio.Prelude |
| notElem | Bio.Prelude |
| Nothing | Bio.Prelude |
| Notice | Control.Monad.Log, Bio.Prelude |
| NPair | Bio.Adna |
| npair | Bio.Adna |
| Ns | Bio.Base, Bio.Prelude, Bio.Bam.Rec, Bio.Bam |
| nub | Bio.Prelude |
| nubBy | Bio.Prelude |
| nubHash | Bio.Util.Nub |
| nubHashBy | Bio.Util.Nub |
| nucA | Bio.Base, Bio.Prelude |
| nucC | Bio.Base, Bio.Prelude |
| nucG | Bio.Base, Bio.Prelude |
| Nucleotide | Bio.Base, Bio.Prelude |
| Nucleotides | Bio.Base, Bio.Prelude, Bio.Bam.Rec, Bio.Bam |
| nucsA | Bio.Base, Bio.Prelude |
| nucsC | Bio.Base, Bio.Prelude |
| nucsG | Bio.Base, Bio.Prelude |
| nucsN | Bio.Base, Bio.Prelude |
| nucsT | Bio.Base, Bio.Prelude |
| nucT | Bio.Base, Bio.Prelude |
| nucToNucs | Bio.Base, Bio.Prelude |
| nudge | Bio.Adna |
| null | Bio.Prelude |
| nullBamRec | Bio.Bam.Rec, Bio.Bam |
| nullFunPtr | Bio.Prelude |
| nullPtr | Bio.Prelude |
| Num | Bio.Prelude |
| numCapabilities | Bio.Prelude |
| numerator | Bio.Prelude |
| numSparks | Bio.Prelude |
| odd | Bio.Prelude |
| Of | Bio.Streaming, Bio.Bam |
| off | Bio.Streaming.Bgzf |
| OldDamage | Bio.Adna |
| on | Bio.Prelude |
| onError | Bio.Prelude |
| onException | Bio.Prelude |
| openBinaryFile | Bio.Prelude |
| OpenPunctuation | Bio.Prelude |
| openTwoBit | Bio.TwoBit |
| optional | Bio.Prelude |
| or | Bio.Prelude |
| Ord | Bio.Prelude |
| ord | Bio.Prelude |
| Ordering | Bio.Prelude |
| orElse | Bio.Prelude |
| OtherError | Bio.Prelude |
| OtherLetter | Bio.Prelude |
| OtherNumber | Bio.Prelude |
| OtherPunctuation | Bio.Prelude |
| OtherSymbol | Bio.Prelude |
| otherwise | Bio.Prelude |
| Overflow | Bio.Prelude |
| overlaps | Bio.Bam.Regions |
| packBam | Bio.Bam.Writer, Bio.Bam |
| Pad | Bio.Bam.Rec, Bio.Bam |
| Pad' | Bio.Bam.Rmdup |
| Pair | Bio.Base, Bio.Prelude |
| panic | Control.Monad.Log |
| PanicCall | |
| 1 (Type/Class) | Control.Monad.Log |
| 2 (Data Constructor) | Control.Monad.Log |
| par | Bio.Prelude |
| ParagraphSeparator | Bio.Prelude |
| parse | Bio.Streaming.Parse |
| parseBamMeta | Bio.Bam.Header, Bio.Bam |
| ParseError | |
| 1 (Type/Class) | Bio.Streaming.Parse |
| 2 (Data Constructor) | Bio.Streaming.Parse |
| parseFastq | Bio.Bam.Fastq, Bio.Bam |
| parseIO | Bio.Streaming.Parse |
| parseLog | Bio.Streaming.Parse |
| parseM | Bio.Streaming.Parse |
| Parser | Bio.Streaming.Parse |
| parseVersion | Bio.Prelude |
| partition | Bio.Prelude |
| partitionEithers | Bio.Prelude |
| PatternMatchFail | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| peek | Bio.Prelude |
| peekByteOff | Bio.Prelude |
| peekElemOff | Bio.Prelude |
| peekUnalnWord16BE | Bio.Util.Storable |
| peekUnalnWord16LE | Bio.Util.Storable |
| peekUnalnWord32BE | Bio.Util.Storable |
| peekUnalnWord32LE | Bio.Util.Storable |
| peekWord8 | Bio.Util.Storable |
| performGC | Bio.Prelude |
| performMajorGC | Bio.Prelude |
| performMinorGC | Bio.Prelude |
| PermissionDenied | Bio.Prelude |
| permissionErrorType | Bio.Prelude |
| permutations | Bio.Prelude |
| phase | Bio.Prelude |
| pi | Bio.Prelude |
| Pico | Bio.Prelude |
| Pile | |
| 1 (Type/Class) | Bio.Bam.Pileup |
| 2 (Data Constructor) | Bio.Bam.Pileup |
| Pile' | Bio.Bam.Pileup |
| pileup | Bio.Bam.Pileup |
| pipeBamOutput | Bio.Bam.Writer, Bio.Bam |
| pipeSamOutput | Bio.Bam.Writer, Bio.Bam |
| plusForeignPtr | Bio.Prelude |
| plusPtr | Bio.Prelude |
| poke | Bio.Prelude |
| pokeByteOff | Bio.Prelude |
| pokeElemOff | Bio.Prelude |
| pokeUnalnWord32LE | Bio.Util.Storable |
| polar | Bio.Prelude |
| popCount | Bio.Prelude |
| popCountDefault | Bio.Prelude |
| Pos | Bio.Base, Bio.Prelude |
| Position | Bio.Base, Bio.Prelude |
| PosPrimChunks | Bio.Bam.Pileup |
| pow | Bio.Base, Bio.Prelude |
| Pr | Bio.Base, Bio.Prelude |
| pred | Bio.Prelude |
| Prefix | Bio.Prelude |
| PrimBase | Bio.Bam.Pileup |
| PrimChunks | Bio.Bam.Pileup |
| primitive | Bio.Prelude |
| PrimMonad | Bio.Prelude |
| PrimMVar | Bio.Prelude |
| PrimState | Bio.Prelude |
| Bio.Prelude | |
| printf | Bio.Prelude |
| PrivateUse | Bio.Prelude |
| Prob | Bio.Base, Bio.Prelude |
| Prob' | Bio.Base, Bio.Prelude |
| probToQual | Bio.Base, Bio.Prelude |
| Product | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| product | Bio.Prelude |
| progressGen | Bio.Streaming, Bio.Bam |
| progressNum | Bio.Streaming, Bio.Bam |
| progressPos | Bio.Streaming, Bio.Bam |
| properBases | Bio.Base, Bio.Prelude |
| properFraction | Bio.Prelude |
| protectTerm | Bio.Streaming, Bio.Bam |
| ProtocolError | Bio.Prelude |
| Proxy | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| pseq | Bio.Prelude |
| psequence | Bio.Streaming, Bio.Bam |
| Ptr | Bio.Prelude |
| ptrToIntPtr | Bio.Prelude |
| ptrToWordPtr | Bio.Prelude |
| pure | Bio.Prelude |
| pushBam | Bio.Bam.Writer, Bio.Bam |
| putChar | Bio.Prelude |
| putMVar | Bio.Prelude |
| putStr | Bio.Prelude |
| putStrLn | Bio.Prelude |
| putTraceMsg | Bio.Prelude |
| p_indel_pile | Bio.Bam.Pileup |
| p_indel_stat | Bio.Bam.Pileup |
| p_is_reverse | Bio.Base, Bio.Prelude |
| p_pos | Bio.Bam.Pileup |
| p_refseq | Bio.Bam.Pileup |
| p_seq | Bio.Base, Bio.Prelude |
| p_snp_pile | Bio.Bam.Pileup |
| p_snp_stat | Bio.Bam.Pileup |
| p_start | Bio.Base, Bio.Prelude |
| Q | Bio.Base, Bio.Prelude |
| qnames | Bio.Bam.Reader, Bio.Bam |
| QSem | Bio.Prelude |
| QSemN | Bio.Prelude |
| Qual | Bio.Base, Bio.Prelude |
| QualFilter | Bio.Bam.Filter, Bio.Bam |
| QualitiesMissing | |
| 1 (Type/Class) | Bio.Bam.Fastq, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Fastq, Bio.Bam |
| qualityAverage | Bio.Bam.Filter, Bio.Bam |
| qualityFromNewIllumina | Bio.Bam.Filter, Bio.Bam |
| qualityFromOldIllumina | Bio.Bam.Filter, Bio.Bam |
| qualityMinimum | Bio.Bam.Filter, Bio.Bam |
| qualToProb | Bio.Base, Bio.Prelude |
| Queryname | Bio.Bam.Header, Bio.Bam |
| quot | Bio.Prelude |
| quotRem | Bio.Prelude |
| Range | |
| 1 (Type/Class) | Bio.Base, Bio.Prelude |
| 2 (Data Constructor) | Bio.Base, Bio.Prelude |
| range | Bio.Prelude |
| rangeSize | Bio.Prelude |
| Ratio | Bio.Prelude |
| Rational | Bio.Prelude |
| RatioZeroDenominator | Bio.Prelude |
| raw_data | Bio.Bam.Rec, Bio.Bam |
| Read | Bio.Prelude |
| read | Bio.Prelude |
| readBaiIndex | Bio.Bam.Index, Bio.Bam |
| readBamIndex | Bio.Bam.Index, Bio.Bam |
| readChan | Bio.Prelude |
| readConstr | Bio.Prelude |
| readDec | Bio.Prelude |
| readEither | Bio.Prelude |
| readFile | Bio.Prelude |
| readFloat | Bio.Prelude |
| readHex | Bio.Prelude |
| readInt | Bio.Prelude |
| readIO | Bio.Prelude |
| readIORef | Bio.Prelude |
| readList | Bio.Prelude |
| readListPrec | Bio.Prelude |
| readLitChar | Bio.Prelude |
| readLn | Bio.Prelude |
| readMaybe | Bio.Prelude |
| readMd | Bio.Bam.Header, Bio.Bam |
| ReadMode | Bio.Prelude |
| readMVar | Bio.Prelude |
| readOct | Bio.Prelude |
| readOOM | Bio.Util.Numeric |
| ReadP | Bio.Prelude |
| readParen | Bio.Prelude |
| ReadPrec | Bio.Prelude |
| readPrec | Bio.Prelude |
| readPrec_to_P | Bio.Prelude |
| readPrec_to_S | Bio.Prelude |
| readP_to_Prec | Bio.Prelude |
| readP_to_S | Bio.Prelude |
| ReadS | Bio.Prelude |
| reads | Bio.Prelude |
| readSigned | Bio.Prelude |
| readsPrec | Bio.Prelude |
| readSTRef | Bio.Prelude |
| reads_mapq0 | Bio.Bam.Pileup |
| readS_to_P | Bio.Prelude |
| readS_to_Prec | Bio.Prelude |
| readTabix | Bio.Bam.Index, Bio.Bam |
| readTVar | Bio.Prelude |
| readTVarIO | Bio.Prelude |
| ReadWriteMode | Bio.Prelude |
| read_depth | Bio.Bam.Pileup |
| Real | Bio.Prelude |
| RealFloat | Bio.Prelude |
| RealFrac | Bio.Prelude |
| realPart | Bio.Prelude |
| realToFrac | Bio.Prelude |
| RealWorld | Bio.Prelude |
| RecConError | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| recip | Bio.Prelude |
| RecSelError | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| RecUpdError | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| Refl | Bio.Prelude |
| Refs | |
| 1 (Type/Class) | Bio.Bam.Header, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Header, Bio.Bam |
| Refseq | |
| 1 (Type/Class) | Bio.Bam.Header, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Header, Bio.Bam |
| refseq | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| refseq_bins | Bio.Bam.Index, Bio.Bam |
| refseq_ckpoints | Bio.Bam.Index, Bio.Bam |
| Region | |
| 1 (Type/Class) | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| Regions | |
| 1 (Type/Class) | Bio.Bam.Regions |
| 2 (Data Constructor) | Bio.Bam.Regions |
| registerDelay | Bio.Prelude |
| RelativeSeek | Bio.Prelude |
| rem | Bio.Prelude |
| removeWarts | Bio.Bam.Evan |
| Rep' | Bio.Bam.Rmdup |
| Rep1 | Bio.Prelude |
| repConstr | Bio.Prelude |
| repeat | Bio.Prelude |
| repeats | Bio.Streaming, Bio.Bam |
| repeatsM | Bio.Streaming, Bio.Bam |
| replicate | Bio.Prelude |
| replicateM | Bio.Prelude |
| replicateM_ | Bio.Prelude |
| replicates | Bio.Streaming, Bio.Bam |
| reportError | Bio.Prelude |
| reportHeapOverflow | Bio.Prelude |
| reporting_level | Control.Monad.Log |
| reportStackOverflow | Bio.Prelude |
| resolution | Bio.Prelude |
| ResourceBusy | Bio.Prelude |
| ResourceExhausted | Bio.Prelude |
| ResourceVanished | Bio.Prelude |
| retry | Bio.Prelude |
| return | Bio.Prelude |
| returnA | Bio.Prelude |
| reverse | Bio.Prelude |
| reverseRange | Bio.Base, Bio.Prelude |
| Right | Bio.Prelude |
| right | Bio.Prelude |
| rights | Bio.Prelude |
| rmdup | Bio.Bam.Rmdup |
| RmdupException | Bio.Bam.Rmdup |
| rnfTyCon | Bio.Prelude |
| rnfTypeRep | Bio.Prelude |
| rotate | Bio.Prelude |
| rotateL | Bio.Prelude |
| rotateR | Bio.Prelude |
| round | Bio.Prelude |
| rtsSupportsBoundThreads | Bio.Prelude |
| run | Bio.Streaming, Bio.Bam |
| runHandlers | Bio.Prelude |
| runIdentity | Bio.Streaming, Bio.Bam |
| runInBoundThread | Bio.Prelude |
| runInUnboundThread | Bio.Prelude |
| runKleisli | Bio.Prelude |
| runLogged | Control.Monad.Log |
| runSparks | Bio.Prelude |
| runST | Bio.Prelude |
| r_length | Bio.Base, Bio.Prelude |
| r_pos | Bio.Base, Bio.Prelude |
| scalarMat | Bio.Adna |
| scaleFloat | Bio.Prelude |
| scanl | Bio.Prelude |
| scanl' | Bio.Prelude |
| scanl1 | Bio.Prelude |
| scanr | Bio.Prelude |
| scanr1 | Bio.Prelude |
| sconcat | Bio.Prelude |
| second | Bio.Prelude, Bio.Streaming, Bio.Bam |
| Seek | Bio.Bam.Pileup |
| SeekFromEnd | Bio.Prelude |
| SeekMode | Bio.Prelude |
| Semigroup | Bio.Prelude |
| separate | Bio.Streaming, Bio.Bam |
| seq | Bio.Prelude |
| sequence | Bio.Prelude |
| sequenceA | Bio.Prelude |
| sequenceA_ | Bio.Prelude |
| SequenceHasGaps | |
| 1 (Type/Class) | Bio.Bam.Fastq, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Fastq, Bio.Bam |
| sequence_ | Bio.Prelude |
| setAllocationCounter | Bio.Prelude |
| setBit | Bio.Prelude |
| setEnv | Bio.Prelude |
| setHandler | Bio.Prelude |
| setMD | Bio.Bam.Rmdup |
| setNumCapabilities | Bio.Prelude |
| setQualFlag | Bio.Bam.Rec, Bio.Bam |
| setUncaughtExceptionHandler | Bio.Prelude |
| shift | Bio.Prelude |
| shiftL | Bio.Prelude |
| shiftPosition | Bio.Base, Bio.Prelude |
| shiftR | Bio.Prelude |
| shiftRange | Bio.Base, Bio.Prelude |
| Show | Bio.Prelude |
| show | Bio.Prelude |
| showAligned | Bio.Align |
| showBamMeta | Bio.Bam.Header, Bio.Bam |
| showChar | Bio.Prelude |
| showConstr | Bio.Prelude |
| showEFloat | Bio.Prelude |
| showFFloat | Bio.Prelude |
| showFFloatAlt | Bio.Prelude |
| showFixed | Bio.Prelude |
| showFloat | Bio.Prelude |
| showGFloat | Bio.Prelude |
| showGFloatAlt | Bio.Prelude |
| showHex | Bio.Prelude |
| showHFloat | Bio.Prelude |
| showInt | Bio.Prelude |
| showIntAtBase | Bio.Prelude |
| showList | Bio.Prelude |
| showLitChar | Bio.Prelude |
| showMd | Bio.Bam.Header, Bio.Bam |
| showNucleotide | Bio.Base, Bio.Prelude |
| showNucleotides | Bio.Base, Bio.Prelude |
| showNum | Bio.Util.Numeric |
| showOct | Bio.Prelude |
| showOOM | Bio.Util.Numeric |
| showParen | Bio.Prelude |
| ShowS | Bio.Prelude |
| shows | Bio.Prelude |
| showSigned | Bio.Prelude |
| showsPrec | Bio.Prelude |
| showString | Bio.Prelude |
| showsTypeRep | Bio.Prelude |
| showVersion | Bio.Prelude |
| Signal | Bio.Prelude |
| signalQSem | Bio.Prelude |
| signalQSemN | Bio.Prelude |
| significand | Bio.Prelude |
| signum | Bio.Prelude |
| sin | Bio.Prelude |
| singleton | Bio.Streaming.Bytes |
| sinh | Bio.Prelude |
| size | Bio.Streaming.Bgzf |
| sizeOf | Bio.Prelude |
| SMa | Bio.Bam.Rec, Bio.Bam |
| SMa' | Bio.Bam.Rmdup |
| snd | Bio.Prelude |
| snd_np | Bio.Adna |
| Soft | Bio.TwoBit |
| some | Bio.Prelude |
| SomeAsyncException | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| SomeException | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| sort | Bio.Prelude |
| sortBy | Bio.Prelude |
| sortOn | Bio.Prelude |
| sortWith | Bio.Prelude |
| Space | Bio.Prelude |
| SpacingCombiningMark | Bio.Prelude |
| span | Bio.Prelude |
| splitAt | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| splitAt' | Bio.Streaming.Bytes |
| splitsAt | Bio.Streaming, Bio.Bam |
| splitTyConApp | Bio.Prelude |
| sqrt | Bio.Prelude |
| sq_length | Bio.Bam.Header, Bio.Bam |
| sq_name | Bio.Bam.Header, Bio.Bam |
| sq_other_shit | Bio.Bam.Header, Bio.Bam |
| ssd_delta | Bio.Adna |
| ssd_kappa | Bio.Adna |
| ssd_lambda | Bio.Adna |
| ssd_sigma | Bio.Adna |
| ST | Bio.Prelude |
| StableName | Bio.Prelude |
| StablePtr | Bio.Prelude |
| StackOverflow | Bio.Prelude |
| stackOverflow | Bio.Prelude |
| start | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| stderr | Bio.Prelude |
| stdin | Bio.Prelude |
| stdout | Bio.Prelude |
| stimes | Bio.Prelude |
| STM | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| Storable | Bio.Prelude |
| Stream | Bio.Streaming, Bio.Bam |
| stream2vector | Bio.Streaming.Vector |
| stream2vectorN | Bio.Streaming.Vector |
| streamBamRefseq | Bio.Bam.Index, Bio.Bam |
| streamBamRegions | Bio.Bam.Index, Bio.Bam |
| streamBamSubseq | Bio.Bam.Index, Bio.Bam |
| streamBamUnaligned | Bio.Bam.Index, Bio.Bam |
| streamBuild | Bio.Streaming, Bio.Bam |
| streamFile | Bio.Streaming, Bio.Bam |
| streamFold | Bio.Streaming, Bio.Bam |
| streamHandle | Bio.Streaming, Bio.Bam |
| streamInput | Bio.Streaming, Bio.Bam |
| streamInputs | Bio.Streaming, Bio.Bam |
| STRef | Bio.Prelude |
| strictly | Bio.Streaming, Bio.Bam |
| String | Bio.Prelude |
| stripPrefix | Bio.Prelude |
| stToIO | Bio.Prelude |
| Subsequence | |
| 1 (Type/Class) | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Regions, Bio.Bam.Index, Bio.Bam |
| subsequences | Bio.Prelude |
| Subst | Bio.Adna |
| SubstitutionStats | Bio.Adna |
| substs3 | Bio.Adna |
| substs3cpg | Bio.Adna |
| substs3d3 | Bio.Adna |
| substs3d5 | Bio.Adna |
| substs3dd | Bio.Adna |
| substs5 | Bio.Adna |
| substs5cpg | Bio.Adna |
| substs5d3 | Bio.Adna |
| substs5d5 | Bio.Adna |
| substs5dd | Bio.Adna |
| subtract | Bio.Prelude |
| succ | Bio.Prelude |
| Sum | |
| 1 (Type/Class) | Bio.Streaming, Bio.Bam |
| 2 (Data Constructor) | Bio.Prelude |
| 3 (Type/Class) | Bio.Prelude |
| sum | Bio.Prelude |
| sum_mapq | Bio.Bam.Pileup |
| sum_mapq_squared | Bio.Bam.Pileup |
| Surrogate | Bio.Prelude |
| swap | Bio.Prelude |
| swapMVar | Bio.Prelude |
| SystemError | Bio.Prelude |
| tail | Bio.Prelude |
| tails | Bio.Prelude |
| take | Bio.Prelude |
| takeMVar | Bio.Prelude |
| takeOverlap | Bio.TwoBit |
| takes | Bio.Streaming, Bio.Bam |
| takeWhile | Bio.Prelude |
| tan | Bio.Prelude |
| tanh | Bio.Prelude |
| TBF | Bio.TwoBit |
| tbf_raw | Bio.TwoBit |
| tbf_seqs | Bio.TwoBit |
| TBS | Bio.TwoBit |
| tbs_dna_offset | Bio.TwoBit |
| tbs_dna_size | Bio.TwoBit |
| tbs_m_blocks | Bio.TwoBit |
| tbs_n_blocks | Bio.TwoBit |
| testBit | Bio.Prelude |
| testBitDefault | Bio.Prelude |
| Text | |
| 1 (Type/Class) | Bio.Prelude |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| ThreadBlocked | Bio.Prelude |
| threadCapability | Bio.Prelude |
| threadDelay | Bio.Prelude |
| ThreadDied | Bio.Prelude |
| ThreadFinished | Bio.Prelude |
| ThreadId | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| ThreadKilled | Bio.Prelude |
| ThreadRunning | Bio.Prelude |
| ThreadStatus | Bio.Prelude |
| threadStatus | Bio.Prelude |
| threadWaitRead | Bio.Prelude |
| threadWaitReadSTM | Bio.Prelude |
| threadWaitWrite | Bio.Prelude |
| threadWaitWriteSTM | Bio.Prelude |
| throw | Bio.Prelude |
| throwIO | Bio.Prelude |
| throwM | Bio.Prelude |
| throwSTM | Bio.Prelude |
| throwTo | Bio.Prelude |
| TimeExpired | Bio.Prelude |
| timeout | Bio.Prelude |
| TitlecaseLetter | Bio.Prelude |
| TkBclSpecial | Bio.Streaming.Bgzf |
| TkDecimal | Bio.Streaming.Bgzf |
| TkDouble | Bio.Streaming.Bgzf |
| TkEnd | Bio.Streaming.Bgzf |
| TkEndRecord | Bio.Streaming.Bgzf |
| TkEndRecordPart1 | Bio.Streaming.Bgzf |
| TkEndRecordPart2 | Bio.Streaming.Bgzf |
| TkFloat | Bio.Streaming.Bgzf |
| TkLowLevel | Bio.Streaming.Bgzf |
| TkMemCopy | Bio.Streaming.Bgzf |
| TkMemFill | Bio.Streaming.Bgzf |
| TkSetMark | Bio.Streaming.Bgzf |
| TkString | Bio.Streaming.Bgzf |
| TkWord16 | Bio.Streaming.Bgzf |
| TkWord32 | Bio.Streaming.Bgzf |
| TkWord8 | Bio.Streaming.Bgzf |
| to1 | Bio.Prelude |
| toByteStream | Bio.Streaming.Bytes |
| toByteStreamWith | Bio.Streaming.Bytes |
| toCigar | Bio.Bam.Rmdup |
| toConstr | Bio.Prelude |
| toDyn | Bio.Prelude |
| toECig | Bio.Bam.Rmdup |
| toEnum | Bio.Prelude |
| toException | Bio.Prelude |
| toInteger | Bio.Prelude |
| toIntegralSized | Bio.Prelude |
| toLazy | Bio.Streaming.Bytes |
| toList | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Bam.Regions |
| toLower | Bio.Prelude |
| toNucleotide | Bio.Base, Bio.Prelude |
| toNucleotides | Bio.Base, Bio.Prelude |
| toProb | Bio.Base, Bio.Prelude |
| toQual | Bio.Base, Bio.Prelude |
| toRational | Bio.Prelude |
| toStrict | Bio.Streaming.Bytes |
| toTitle | Bio.Prelude |
| touchForeignPtr | Bio.Prelude |
| toUpper | Bio.Prelude |
| trace | Bio.Prelude |
| traceEvent | Bio.Prelude |
| traceEventIO | Bio.Prelude |
| traceId | Bio.Prelude |
| traceIO | Bio.Prelude |
| traceM | Bio.Prelude |
| traceMarker | Bio.Prelude |
| traceMarkerIO | Bio.Prelude |
| traceShow | Bio.Prelude |
| traceShowId | Bio.Prelude |
| traceShowM | Bio.Prelude |
| traceStack | Bio.Prelude |
| Trailing | Bio.Adna |
| transpose | Bio.Prelude |
| Traversable | Bio.Prelude |
| traverse | Bio.Prelude |
| traverse_ | Bio.Prelude |
| trim | Bio.Streaming.Bytes |
| trimBam | Bio.Bam.Trim, Bio.Bam |
| trim_3 | Bio.Bam.Trim, Bio.Bam |
| trim_3' | Bio.Bam.Trim, Bio.Bam |
| trim_low_quality | Bio.Bam.Trim, Bio.Bam |
| True | Bio.Prelude |
| truncate | Bio.Prelude |
| try | Bio.Prelude |
| tryIOError | Bio.Prelude |
| tryJust | Bio.Prelude |
| tryPutMVar | Bio.Prelude |
| tryReadMVar | Bio.Prelude |
| tryTakeMVar | Bio.Prelude |
| TVar | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| TwoBitFile | Bio.TwoBit |
| TwoBitSequence | Bio.TwoBit |
| TyCon | Bio.Prelude |
| tyConFingerprint | Bio.Prelude |
| tyConModule | Bio.Prelude |
| tyconModule | Bio.Prelude |
| tyConName | Bio.Prelude |
| tyConPackage | Bio.Prelude |
| tyconUQname | Bio.Prelude |
| Typeable | Bio.Prelude |
| TypeError | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| typeOf | Bio.Prelude |
| typeOf1 | Bio.Prelude |
| typeOf2 | Bio.Prelude |
| typeOf3 | Bio.Prelude |
| typeOf4 | Bio.Prelude |
| typeOf5 | Bio.Prelude |
| typeOf6 | Bio.Prelude |
| typeOf7 | Bio.Prelude |
| TypeRep | Bio.Prelude |
| typeRep | Bio.Prelude |
| typeRepArgs | Bio.Prelude |
| typeRepFingerprint | Bio.Prelude |
| typeRepTyCon | Bio.Prelude |
| type_mask | Bio.Bam.Rec, Bio.Bam |
| unaln_off | Bio.Bam.Index, Bio.Bam |
| uncons | Bio.Prelude |
| uncurry | Bio.Prelude |
| undefined | Bio.Prelude |
| UndefinedElement | Bio.Prelude |
| Underflow | Bio.Prelude |
| unfold | Bio.Streaming, Bio.Bam |
| unfoldr | Bio.Prelude |
| Uni | Bio.Prelude |
| uninterruptibleMask | Bio.Prelude |
| uninterruptibleMask_ | Bio.Prelude |
| union | Bio.Prelude |
| unionBy | Bio.Prelude |
| Unique | Bio.Prelude |
| univDamage | Bio.Adna |
| Unknown | Bio.Bam.Header, Bio.Bam |
| UnknownDamage | Bio.Adna |
| unknownMapq | Bio.Bam.Header, Bio.Bam |
| unless | Bio.Prelude |
| unlines | Bio.Prelude |
| Unmasked | Bio.Prelude |
| unN | Bio.Base, Bio.Prelude |
| unNs | Bio.Base, Bio.Prelude, Bio.Bam.Rec, Bio.Bam |
| Unpack | Bio.Util.Text, Bio.Prelude |
| unpack | Bio.Util.Text, Bio.Prelude |
| unpackBam | Bio.Bam.Rec, Bio.Bam |
| unpackBamRec | Bio.Bam.Writer, Bio.Bam |
| unPr | Bio.Base, Bio.Prelude |
| unQ | Bio.Base, Bio.Prelude |
| unRefs | Bio.Bam.Header, Bio.Bam |
| unRefseq | Bio.Bam.Header, Bio.Bam |
| unsafeCoerce | Bio.Prelude |
| unsafeDupablePerformIO | Bio.Prelude |
| unsafeFixIO | Bio.Prelude |
| unsafeInterleaveIO | Bio.Prelude |
| unsafeIOToSTM | Bio.Prelude |
| unsafePerformIO | Bio.Prelude |
| unsafeShiftL | Bio.Prelude |
| unsafeShiftR | Bio.Prelude |
| UnsatisfiedConstraints | Bio.Prelude |
| unseparate | Bio.Streaming, Bio.Bam |
| unsetEnv | Bio.Prelude |
| Unsorted | Bio.Bam.Header, Bio.Bam |
| UnsortedInput | Bio.Bam.Rmdup |
| UnsupportedOperation | Bio.Prelude |
| unsupportedOperation | Bio.Prelude |
| untangle | Bio.Prelude |
| until | Bio.Prelude |
| untilJust | Bio.Streaming, Bio.Bam |
| UnwantedTerminal | |
| 1 (Type/Class) | Bio.Streaming, Bio.Bam |
| 2 (Data Constructor) | Bio.Streaming, Bio.Bam |
| unwords | Bio.Prelude |
| unwrapArrow | Bio.Prelude |
| unwrapMonad | Bio.Prelude |
| unzip | Bio.Prelude |
| unzip3 | Bio.Prelude |
| unzip4 | Bio.Prelude |
| unzip5 | Bio.Prelude |
| unzip6 | Bio.Prelude |
| unzip7 | Bio.Prelude |
| unzips | Bio.Streaming, Bio.Bam |
| updateE | Bio.Bam.Rec, Bio.Bam |
| UppercaseLetter | Bio.Prelude |
| used | Bio.Streaming.Bgzf |
| UserError | Bio.Prelude |
| userError | Bio.Prelude |
| userErrorType | Bio.Prelude |
| UserInterrupt | Bio.Prelude |
| Vector_Nucs_half | |
| 1 (Type/Class) | Bio.Bam.Rec, Bio.Bam |
| 2 (Data Constructor) | Bio.Bam.Rec, Bio.Bam |
| Version | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| versionBranch | Bio.Prelude |
| versionTags | Bio.Prelude |
| virt_offset | Bio.Bam.Rec, Bio.Bam |
| void | Bio.Prelude, Bio.Streaming, Bio.Bam |
| V_Nuc | |
| 1 (Type/Class) | Bio.Bam.Pileup |
| 2 (Data Constructor) | Bio.Bam.Pileup |
| V_Nucs | |
| 1 (Type/Class) | Bio.Bam.Pileup |
| 2 (Data Constructor) | Bio.Bam.Pileup |
| w2c | Bio.Util.Text, Bio.Prelude |
| waitQSem | Bio.Prelude |
| waitQSemN | Bio.Prelude |
| want_progress | Control.Monad.Log |
| Warning | Control.Monad.Log, Bio.Prelude |
| when | Bio.Prelude |
| wilson | Bio.Util.Numeric |
| withADSeqs | Bio.Bam.Trim, Bio.Bam |
| withArgs | Bio.Prelude |
| withBinaryFile | Bio.Prelude |
| withForeignPtr | Bio.Prelude |
| withIndexedBam | Bio.Bam.Index, Bio.Bam |
| withLogging | Control.Monad.Log |
| withLogging_ | Control.Monad.Log |
| WithMD | Bio.Bam.Rmdup |
| withMVar | Bio.Prelude |
| withMVarMasked | Bio.Prelude |
| WithoutMD | Bio.Bam.Rmdup |
| withOutputFile | Bio.Streaming.Bytes, Bio.Streaming, Bio.Bam |
| withProgName | Bio.Prelude |
| Word | Bio.Prelude |
| Word16 | Bio.Prelude |
| Word32 | Bio.Prelude |
| Word64 | Bio.Prelude |
| Word8 | Bio.Base, Bio.Prelude |
| WordPtr | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| wordPtrToPtr | Bio.Prelude |
| words | Bio.Prelude |
| wrap | Bio.Streaming, Bio.Bam |
| WrapArrow | Bio.Prelude |
| WrapMonad | Bio.Prelude |
| WrappedArrow | Bio.Prelude |
| WrappedMonad | Bio.Prelude |
| wrapRange | Bio.Base, Bio.Prelude |
| wrapTo | Bio.Bam.Rmdup |
| writeBamFile | Bio.Bam.Writer, Bio.Bam |
| writeBamHandle | Bio.Bam.Writer, Bio.Bam |
| writeChan | Bio.Prelude |
| writeFile | |
| 1 (Function) | Bio.Prelude |
| 2 (Function) | Bio.Streaming.Bytes |
| writeIORef | Bio.Prelude |
| writeList2Chan | Bio.Prelude |
| WriteMode | Bio.Prelude |
| writeSTRef | Bio.Prelude |
| writeTVar | Bio.Prelude |
| xor | Bio.Prelude |
| yield | Bio.Prelude |
| yields | Bio.Streaming, Bio.Bam |
| zeroArrow | Bio.Prelude |
| zeroBits | Bio.Prelude |
| zip | Bio.Prelude |
| zip3 | Bio.Prelude |
| zip4 | Bio.Prelude |
| zip5 | Bio.Prelude |
| zip6 | Bio.Prelude |
| zip7 | Bio.Prelude |
| ZipList | |
| 1 (Data Constructor) | Bio.Prelude |
| 2 (Type/Class) | Bio.Prelude |
| zips | Bio.Streaming, Bio.Bam |
| zipsWith | Bio.Streaming, Bio.Bam |
| zipsWith' | Bio.Streaming, Bio.Bam |
| zipWith | Bio.Prelude |
| zipWith3 | Bio.Prelude |
| zipWith4 | Bio.Prelude |
| zipWith5 | Bio.Prelude |
| zipWith6 | Bio.Prelude |
| zipWith7 | Bio.Prelude |
| zipWithM | Bio.Prelude |
| zipWithM_ | Bio.Prelude |
| \\ | Bio.Prelude |
| ^ | Bio.Prelude |
| ^<< | Bio.Prelude |
| ^>> | Bio.Prelude |
| ^^ | Bio.Prelude |
| _pb_base | Bio.Bam.Pileup |
| _pb_chunks | Bio.Bam.Pileup |
| _pb_mapq | Bio.Bam.Pileup |
| _pb_wait | Bio.Bam.Pileup |
| || | Bio.Prelude |
| ||| | Bio.Prelude |