Contents
Index
RNAwolf-0.3.2.0: RNA folding with non-canonical basepairs and base-triplets.
Index
accMeas
BioInf.PassiveAggressive
BaseF
BioInf.RNAwolf.Types
BTAnswer
BioInf.RNAwolf.Types
btBulgeInner
BioInf.RNAwolf.Bulge
btBulgeLoop
BioInf.RNAwolf.Bulge
btBulgeOuter
BioInf.RNAwolf.Bulge
btHairpin
BioInf.RNAwolf.Hairpin
btInteriorInner
BioInf.RNAwolf.Interior
btInteriorLoop
BioInf.RNAwolf.Interior
btInteriorOuter
BioInf.RNAwolf.Interior
btLeftUnpaired
BioInf.RNAwolf.Extern
btMl1Stem
BioInf.RNAwolf.Multibranched
btMlClose
BioInf.RNAwolf.Multibranched
btMlHelix
BioInf.RNAwolf.Multibranched
btMlLoop
BioInf.RNAwolf.Multibranched
btMlStem
BioInf.RNAwolf.Multibranched
btMlStems
BioInf.RNAwolf.Multibranched
btNstem
BioInf.RNAwolf.Stem
btOne
BioInf.RNAwolf.Extern
btStem
1 (Function)
BioInf.RNAwolf.Extern
2 (Function)
BioInf.RNAwolf.Stem
btStems
BioInf.RNAwolf.Extern
btUnpairedRight
BioInf.RNAwolf.Multibranched
btUnpairedRight1
BioInf.RNAwolf.Multibranched
BulgeClose
BioInf.Keys
bulgeClose
BioInf.Params
BulgeLength
BioInf.Keys
bulgeLength
BioInf.Params
BulgeTriplet
BioInf.Keys
bulgeTriplet
BioInf.Params
changes
BioInf.PassiveAggressive
citr
BioInf.RNAwolf.Types
defaultPA
BioInf.PassiveAggressive
enerDif
BioInf.PassiveAggressive
errorKnownTooGood
BioInf.PassiveAggressive
errors
BioInf.PassiveAggressive
EStem
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
ExtBT
BioInf.RNAwolf.Types
ExtFeatures
BioInf.RNAwolf.Types
ExtTable
BioInf.RNAwolf.Types
fBulgeInner
BioInf.RNAwolf.Bulge
fBulgeLoop
BioInf.RNAwolf.Bulge
fBulgeLoopIndices
BioInf.RNAwolf.Bulge
fBulgeOuter
BioInf.RNAwolf.Bulge
Features
BioInf.RNAwolf.Types
featureVector
BioInf.Keys
fHairpin
BioInf.RNAwolf.Hairpin
fInteriorInner
BioInf.RNAwolf.Interior
fInteriorKLs
BioInf.RNAwolf.Interior
fInteriorLoop
BioInf.RNAwolf.Interior
fInteriorOuter
BioInf.RNAwolf.Interior
fLeftUnpaired
BioInf.RNAwolf.Extern
fMl1Stem
BioInf.RNAwolf.Multibranched
fMlClose
BioInf.RNAwolf.Multibranched
fMlHelix
BioInf.RNAwolf.Multibranched
fMlLoop
BioInf.RNAwolf.Multibranched
fMlStem
BioInf.RNAwolf.Multibranched
fMlStems
BioInf.RNAwolf.Multibranched
fNstem
BioInf.RNAwolf.Stem
fOne
BioInf.RNAwolf.Extern
fromList
BioInf.Params.Import
fStem
1 (Function)
BioInf.RNAwolf.Extern
2 (Function)
BioInf.RNAwolf.Stem
fStems
BioInf.RNAwolf.Extern
fUnpairedRight
BioInf.RNAwolf.Multibranched
fUnpairedRight1
BioInf.RNAwolf.Multibranched
HairpinClose
BioInf.Keys
hairpinClose
BioInf.Params
HairpinLength
BioInf.Keys
hairpinLength
BioInf.Params
iltrc
BioInf.RNAwolf.Interior
InteriorAsym
BioInf.Keys
interiorAsym
BioInf.Params
InteriorClose
BioInf.Keys
interiorClose
BioInf.Params
InteriorLength
BioInf.Keys
interiorLength
BioInf.Params
InterMolInit
BioInf.Keys
interMolInit
BioInf.Params
Keys
BioInf.Keys
kvs
BioInf.Keys
lookupFeatureIndex
BioInf.Keys
max2ExtPairs
BioInf.Params
maxDistance
BioInf.Params
maxExtPair
BioInf.Params
maxExtPairNN
BioInf.Params
maxLength
BioInf.Params
maxTriplet
BioInf.Params
MbClose
BioInf.Keys
mbClose
BioInf.Params
min2ExtPairs
BioInf.Params
minExtPair
BioInf.Params
minExtPairNN
BioInf.Params
minTriplet
BioInf.Params
MultiBranched
BioInf.Keys
multiBranched
BioInf.Params
MultiHelix
BioInf.Keys
multiHelix
BioInf.Params
MultiUnpaired
BioInf.Keys
multiUnpaired
BioInf.Params
NBT
BioInf.RNAwolf.Types
NBulg
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NBulgLoop
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
newD
BioInf.RNAwolf.Types
NExtn
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NInte
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NInteLoop
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NMbr
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NMbr1
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NMult
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NMultLoop
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
NStem
1 (Type/Class)
BioInf.RNAwolf.Types
2 (Data Constructor)
BioInf.RNAwolf.Types
PA
1 (Type/Class)
BioInf.PassiveAggressive
2 (Data Constructor)
BioInf.PassiveAggressive
Pa2ExtPairs
BioInf.Params
PaDistance
BioInf.Params
PaExtPair
BioInf.Params
PaExtPairNN
BioInf.Params
PairDistance
BioInf.Keys
pairDistance
BioInf.Params
PaLength
BioInf.Params
Params
1 (Type/Class)
BioInf.Params
2 (Data Constructor)
BioInf.Params
paramsKeys
BioInf.Keys
rnaWolf
BioInf.RNAwolf
rnaWolfBacktrack
BioInf.RNAwolf
rnaWolfOptimal
BioInf.RNAwolf
splitXs
BioInf.Params.Import
ssTree
BioInf.Keys
Stem
BioInf.Keys
stem
BioInf.Params
StemTriplet
BioInf.Keys
stemTriplet
BioInf.Params
Table
BioInf.RNAwolf.Types
Tables
BioInf.RNAwolf.Types
testD
BioInf.RNAwolf.Types
toList
BioInf.Params.Export
treeToFeatures
BioInf.Keys
unBulgLoop
BioInf.RNAwolf.Types
unEStem
BioInf.RNAwolf.Types
unMultLoop
BioInf.RNAwolf.Types
unNBulg
BioInf.RNAwolf.Types
unNExtn
BioInf.RNAwolf.Types
unNInte
BioInf.RNAwolf.Types
unNInteLoop
BioInf.RNAwolf.Types
unNMbr
BioInf.RNAwolf.Types
unNMbr1
BioInf.RNAwolf.Types
unNMult
BioInf.RNAwolf.Types
unNStem
BioInf.RNAwolf.Types
vks
BioInf.Keys
wsh
BioInf.RNAwolf.Types
zero2ExtPairs
BioInf.Params
zeroDistance
BioInf.Params
zeroExtPair
BioInf.Params
zeroExtPairNN
BioInf.Params
zeroLength
BioInf.Params
zeroParams
BioInf.Params
zeroTriplet
BioInf.Params