RNAdraw: Draw RNA secondary structures
We provide a number of ways to draw RNA secondary structures. In particular, the following types of structures can be (more or less elegantly) drawn:
Dot plots for mfe and partition function
canonical RNA secondary structures without pseudoknots
non-canonical extended RNA secondary structures
pseudoknotted secondary structures
From top to bottom, the beauty of presentation degrades. Some emphasis is put on ASCII-drawings, especially Vienna dot-bracket-like notation.
Modules
[Index]
Downloads
- RNAdraw-0.2.0.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.2.0.1 |
|---|---|
| Change log | changelog |
| Dependencies | array, base (>3 && <5), BiobaseXNA (>=0.8.1), bytestring, cmdargs (>=0.10), containers, PrimitiveArray (>=0.5.3), QuasiText (>=0.1.2.5), repa (>=3.2), split (>=0.2), text, vector (>=0.10) [details] |
| License | GPL-3.0-only |
| Copyright | Christian Hoener zu Siederdissen, 2011-2014 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Uploaded | by ChristianHoener at 2014-02-03T21:49:30Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | RNAdotplot |
| Downloads | 1492 total (1 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Successful builds reported [all 1 reports] |