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Directory listing for NGLess-1.4.2.0 source tarball

NGLess-1.4.2.0/

• COPYING
• ChangeLog
• Makefile
• NGLess.cabal
• README.md
• Setup.hs
• Execs/
  • Bench.hs
  • Main.hs
• Html/
  • index.html
  • ngless.css
  • nglessMapStats.html
  • nglessQC.html
  • perBaseQualScores.css
• NGLess/
  • BuiltinFunctions.hs
  • CWL.hs
  • Citations.hs
  • CmdArgs.hs
  • Configuration.hs
  • ExternalModules.hs
  • FileManagement.hs
  • FileOrStream.hs
  • Interpret.hs
  • JSONScript.hs
  • Language.hs
  • Modules.hs
  • NGLess.hs
  • Output.hs
  • Parse.hs
  • ReferenceDatabases.hs
  • Tokens.hs
  • Transform.hs
  • Types.hs
  • Validation.hs
  • ValidationIO.hs
  • Version.hs
  • BuiltinModules/
    • Argv.hs
    • AsReads.hs
    • Assemble.hs
    • Checks.hs
    • LoadDirectory.hs
    • ORFFind.hs
    • QCStats.hs
    • Readlines.hs
    • Remove.hs
  • Data/
    • FastQ.c
    • FastQ.hs
    • Fasta.hs
    • GFF.hs
    • Sam.hs
    • FastQ/
      • Utils.hs
  • Dependencies/
    • Embedded.hs
    • Versions.hs
    • embedded.c
  • FileOrStream/
    • Types.hs
  • Interpretation/
    • Count.hs
    • CountFile.hs
    • FastQ.hs
    • Map.hs
    • Select.hs
    • Substrim.hs
    • Unique.hs
    • Write.hs
    • Count/
      • RefSeqInfoVector.h
      • RefSeqInfoVector.hs
  • NGLess/
    • NGError.hs
    • NGLEnvironment.hs
  • StandardModules/
    • Batch.hs
    • Example.hs
    • Minimap2.hs
    • Mocat.hs
    • Motus.hs
    • NGLStdlib.hs
    • Parallel.hs
    • Samtools.hs
    • Soap.hs
    • Mappers/
      • Bwa.hs
      • Minimap2.hs
      • Soap.hs
  • Utils/
    • Batch.hs
    • Conduit.hs
    • Debug.hs
    • Here.hs
    • IntGroups.hs
    • LockFile.hs
    • Network.hs
    • Process.hs
    • ProgressBar.hs
    • Samtools.hs
    • Suggestion.hs
    • Utils.hs
    • Vector.hs
• Tests-Src/
  • Tests.hs
  • Tests/
    • Count.hs
    • FastQ.hs
    • IntGroups.hs
    • Language.hs
    • LoadFQDirectory.hs
    • NGLessAPI.hs
    • Parse.hs
    • Select.hs
    • Types.hs
    • Utils.hs
    • Validation.hs
    • Vector.hs
    • Write.hs
• test_samples/
  • data_set_repeated.fq
  • sample.sam.gz
  • very_short.gtf