name: ClustalParser
version: 1.3.0
synopsis: Libary for parsing Clustal tools output
description: Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign
.
Clustal tools are multiple sequence alignment tools for biological sequence like DNA, RNA and Protein.
For more information on clustal Tools refer to .
.
Mlocarna is a multiple sequence alignment tool for RNA sequences with secondary structure output.
For more information on mlocarna refer to .
.
Cmalign is a multiple sequence alignment program based on RNA family models and produces
,among others, clustal output. It is part of infernal .
license: GPL-3
license-file: LICENSE
author: Florian Eggenhofer
maintainer: egg@informatik.uni-freiburg.de
category: Bioinformatics
build-type: Simple
cabal-version: >=1.10.0
Tested-With: GHC == 8.4.4, GHC == 8.6.5, GHC == 8.8.1
extra-source-files:
README.md ChangeLog.md
source-repository head
type: git
location: https://github.com/eggzilla/ClustalParser
source-repository this
type: git
location: https://github.com/eggzilla/ClustalParser/tree/1.3.0
tag: 1.3.0
Library
Hs-Source-Dirs: .
ghc-options: -Wall -fno-warn-unused-do-bind -fsimpl-tick-factor=500
default-language: Haskell2010
build-depends: base >=4.5 && <5,
parsec>=3.1.9,
vector,
text
Exposed-Modules: Biobase.Clustal
Biobase.Clustal.Import
Biobase.Clustal.Types
executable ClustalParserTest
main-is: ClustalParserTest.hs
build-depends: base >= 4 && <= 5, cmdargs, ClustalParser, either-unwrap, text, vector, parsec
-- compiler options
ghc-options: -Wall -fno-warn-unused-do-bind -fsimpl-tick-factor=500
default-language: Haskell2010
other-modules: Biobase.Clustal.Import
Biobase.Clustal.Types
test-suite hspec
build-depends: base, parsec, ClustalParser, hspec >= 2.0, text, hspec-discover
hs-source-dirs: test-suite
default-language: Haskell2010
main-is: Spec.hs
type: exitcode-stdio-1.0
other-modules: ClustalParserSpec