BiobaseFR3D: Importer for FR3D resources

Provides importers for FR3D resource files. Of particular interest are basepairs files which describe canonical and non-canonical (non-Watson-Crick) base pairings in RNA secondary structure.

The original FR3D paper is:

FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures, Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis. /Journal of Mathematical Biology/ (2008) 56:215–252.

Changes since any 0.1.*:

• Zero-based indexing (FR3D is one-based!) for sequence positions. We do not change the nucleotide PDB number.

• Some sanity checks, a number of FR3D files fall through at this and need to be checked for consistency

Modules

[Index]

Downloads

• BiobaseFR3D-0.2.3.0.tar.gz [browse] (Cabal source package)
• Package description (as included in the package)

Maintainer's Corner

Package maintainers

• ChristianHoener

For package maintainers and hackage trustees

• edit package information

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