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BiobaseEnsembl: Ensembl related datastructures and functions

[ bioinformatics, gpl, library ] [ Propose Tags ] [ Report a vulnerability ]

This library contains high through put sequencing and Ensembl-related functionality: - Datastructures to query Ensembl REST interface

  • Parser for GFF3

  • Datastructure for GFF3

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Modules

[Last Documentation]

  • Biobase
    • Ensembl
      • REST
        • Biobase.Ensembl.REST.Types
    • Biobase.GFF3
      • Biobase.GFF3.Export
      • Biobase.GFF3.Import
      • Biobase.GFF3.Types
    • Biobase.GTF
      • Biobase.GTF.Export
      • Biobase.GTF.Import
      • Biobase.GTF.Types

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Versions [RSS] 0.1.0.0, 0.2.0.0, 0.2.0.1
Change log ChangeLog.md
Dependencies aeson (>=1.0), attoparsec (>=0.13), base (>=4.7 && <5.0), binary (>=0.7), bytestring, cereal (>=0.4), containers, deepseq (>=1.3), directory, either-unwrap, text, vector (>=0.10), word8 [details]
Tested with ghc ==8.6.5, ghc ==8.8.1
License GPL-3.0-only
Copyright Florian Eggenhofer, 2018
Author Florian Eggenhofer
Maintainer egg@informatik.uni-freiburg.de
Category Bioinformatics
Home page https://github.com/eggzilla/BiobaseEnsembl
Bug tracker https://github.com/eggzilla/BiobaseEnsembl/issues
Source repo head: git clone https://github.com/eggzilla/BiobaseEnsembl
this: git clone https://github.com/eggzilla/BiobaseEnsembl/tree/0.2.0.1(tag 0.2.0.1)
Uploaded by FlorianEggenhofer at 2020-01-09T19:39:11Z
Distributions
Reverse Dependencies 1 direct, 1 indirect [details]
Downloads 1725 total (7 in the last 30 days)
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Status Docs not available [build log]
Last success reported on 2020-01-10 [all 3 reports]

Readme for BiobaseEnsembl-0.2.0.1

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BiobaseEnsembl Build Status

This library contains Ensembl related functions and datastructures:

  • GFF3
  • EnsemblGenomes Query Datastructures